Gene annotation
Transcriptome id Sobic.001G014900.1,Sobic.001G014900.2
Synonym AAE16
Functional annotation AMP-binding enzyme, putative, expressed
UniProt A0A1B6QGT9 , A0A1Z5S3W1
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF199
NCBI CDD KOG1256; Long-chain acyl-CoA synthetases (AMP-forming) KOG1180Acyl-CoA synthetase
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G23790 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os03g62850.1,LOC_Os03g62850.2 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a009012 , Zm00025a034745
Brachypodium KQK12149 , PNT73802 , PNT73800 , PNT73801
Barley HORVU5Hr1G120850.1 , HORVU5Hr1G120850.3 , HORVU5Hr1G120850.2 , HORVU5Hr1G120850.5 , HORVU5Hr1G120850.4
Wheat TraesCS5D02G533800 , TraesCS4A02G336400 , TraesCS4A02G336400 , TraesCS4A02G336400 , TraesCS4A02G336400 , TraesCS5B02G536300 , TraesCS5D02G533800 , TraesCS5D02G533800 , TraesCS5D02G533800 , TraesCS5D02G533700 , TraesCS5D02G533700 , TraesCS5D02G533700 , TraesCS5D02G533700 , TraesCS4A02G336500 , TraesCS4A02G336500 , TraesCS5B02G536200 , TraesCS5B02G536200 , TraesCS5B02G536200 , TraesCS5B02G536200
Populus -


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cDNA sequences
Sobic.001G014900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
2 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
3 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
4 Sobic.003G247500 expressed protein -
5 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
7 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
8 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
9 Sobic.010G010700 PHD-finger family protein, expressed -
10 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
11 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
12 Sobic.004G236400 AAA family ATPase, putative, expressed -
13 Sobic.001G289800 BAH domain containing protein, putative, expressed -
14 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
15 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
16 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
17 Sobic.002G316600 expressed protein -
18 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.008G018900 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103


Gene co-expression network
sample Sobic001G014900 Sobic001G014900 Sobic001G194200 Sobic001G194200 Sobic001G014900--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic001G014900--Sobic005G001000 Sobic007G105100 Sobic007G105100 Sobic001G014900--Sobic007G105100 Sobic003G247500 Sobic003G247500 Sobic001G014900--Sobic003G247500 Sobic003G186000 Sobic003G186000 Sobic001G014900--Sobic003G186000 Sobic007G103100 Sobic007G103100 Sobic001G014900--Sobic007G103100 Sobic002G146300 Sobic002G146300 Sobic001G014900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G014900--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic001G014900--Sobic010G010700 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic005G112300 Sobic005G112300 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic007G105100--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic007G105100--Sobic005G008800 Sobic001G540400 Sobic001G540400 Sobic007G105100--Sobic001G540400 Sobic003G360400 Sobic003G360400 Sobic007G105100--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic007G105100--Sobic010G112100 Sobic003G247500--Sobic001G194200 Sobic003G247500--Sobic008G001200 Sobic001G375100 Sobic001G375100 Sobic003G247500--Sobic001G375100 Sobic003G247500--Sobic010G010700 Sobic003G247500--Sobic006G055200 Sobic001G454500 Sobic001G454500 Sobic003G247500--Sobic001G454500 Sobic010G123600 Sobic010G123600 Sobic003G247500--Sobic010G123600 Sobic002G325300 Sobic002G325300 Sobic003G247500--Sobic002G325300 Sobic003G247500--Sobic005G001000 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic002G316600 Sobic002G316600 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic007G103100--Sobic006G055200 Sobic002G146300--Sobic003G205200 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000
Octagon: transcription factors


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