Gene annotation
Transcriptome id Sobic.001G016600.2,Sobic.001G016600.3,Sobic.001G016600.6,Sobic.001G016600.5,Sobic.001G016600.4
Synonym Sb01g001615, FRS8
Functional annotation FAR1 family protein, expressed
UniProt A0A1B6QGW0
Pfam PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G52520 : FAR1-related sequence 6
RAP-DB (Rice) LOC_Os03g62660.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQK12170 , KQK12171 , KQK12169
Barley HORVU5Hr1G120370.1 , HORVU5Hr1G120370.2 , HORVU5Hr1G120370.3 , HORVU5Hr1G120370.4 , HORVU5Hr1G120370.5 , HORVU5Hr1G120370.6 , HORVU5Hr1G120370.7 , HORVU5Hr1G120370.8 , HORVU5Hr1G120370.9 , HORVU5Hr1G120370.10 , HORVU5Hr1G120370.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
3 Sobic.001G363500 DIRP family protein, putative, expressed -
4 Sobic.001G241200 protein kinase domain containing protein, expressed -
5 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
6 Sobic.001G289600 BAH domain containing protein, putative, expressed -
7 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
8 Sobic.001G002000 protein kinase domain containing protein, expressed -
9 Sobic.001G540400 expressed protein -
10 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
11 Sobic.003G422500 expressed protein -
12 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
13 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
15 Sobic.010G069100 expressed protein -
16 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
17 Sobic.002G397500 SAC3/GANP family protein, expressed -
18 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
19 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
20 Sobic.003G266001 - -


Gene co-expression network
sample Sobic001G016600 Sobic001G016600 Sobic005G112300 Sobic005G112300 Sobic001G016600--Sobic005G112300 Sobic005G128400 Sobic005G128400 Sobic001G016600--Sobic005G128400 Sobic001G363500 Sobic001G363500 Sobic001G016600--Sobic001G363500 Sobic001G241200 Sobic001G241200 Sobic001G016600--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic001G016600--Sobic007G105100 Sobic001G289600 Sobic001G289600 Sobic001G016600--Sobic001G289600 Sobic003G229500 Sobic003G229500 Sobic001G016600--Sobic003G229500 Sobic001G002000 Sobic001G002000 Sobic001G016600--Sobic001G002000 Sobic001G540400 Sobic001G540400 Sobic001G016600--Sobic001G540400 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic003G293200 Sobic003G293200 Sobic005G128400--Sobic003G293200 Sobic003G266001 Sobic003G266001 Sobic005G128400--Sobic003G266001 Sobic001G154900 Sobic001G154900 Sobic005G128400--Sobic001G154900 Sobic005G128400--Sobic001G016600 Sobic005G128400--Sobic001G241200 Sobic005G128400--Sobic007G105100 Sobic010G069100 Sobic010G069100 Sobic005G128400--Sobic010G069100 Sobic005G128400--Sobic001G540400 Sobic005G128400--Sobic005G008800 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic007G117400 Sobic007G117400 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic002G309600 Sobic002G309600 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic008G009700 Sobic008G009700 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic003G119000 Sobic003G119000 Sobic001G241200--Sobic003G119000 Sobic001G241200--Sobic001G540400 Sobic007G105100--Sobic005G112300 Sobic007G105100--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic003G360400 Sobic003G360400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100 Sobic001G289600--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic009G191000 Sobic009G191000 Sobic001G289600--Sobic009G191000 Sobic001G289600--Sobic005G008800 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic008G132600 Sobic008G132600 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G101400 Sobic003G101400 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic003G229500--Sobic001G540400 Sobic001G194200 Sobic001G194200 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic004G291900 Sobic004G291900 Sobic001G002000--Sobic004G291900 Sobic001G002000--Sobic003G422500 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100
Octagon: transcription factors


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