Gene annotation
Transcriptome id Sobic.007G225000.2
Synonym Sb07g029010, HMA6, PAA1
Functional annotation copper-transporting ATPase PAA1, putative, expressed
UniProt A0A1Z5RB93
Pfam PF00403 PF12710 PF00122
Panther DB PTHR24093 PTHR24093:SF124
NCBI CDD -
KEGG Orthology K01533; P-type Cu2+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G33520 : P-type ATP-ase 1
RAP-DB (Rice) LOC_Os08g37950.1 : copper-transporting ATPase PAA1, putative, expressed
MaizeGDB (Corn) Zm00025a033714
Brachypodium KQJ98742
Barley HORVU7Hr1G048770.5 , HORVU7Hr1G048770.4 , HORVU7Hr1G048770.3 , HORVU7Hr1G048770.2 , HORVU7Hr1G048770.1
Wheat TraesCS7D02G237500 , TraesCS7B02G135300 , TraesCS7B02G135300 , TraesCS7A02G239700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236400 AAA family ATPase, putative, expressed -
2 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
4 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
5 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
6 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
7 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
8 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
9 Sobic.001G016600 FAR1 family protein, expressed -
10 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
11 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
13 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
14 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
15 Sobic.009G094900 sugar porter, putative, expressed -
16 Sobic.004G314000 expressed protein -
17 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
18 Sobic.008G016300 expressed protein -
19 Sobic.008G011000 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
20 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1


Gene co-expression network
sample Sobic007G225000 Sobic007G225000 Sobic004G236400 Sobic004G236400 Sobic007G225000--Sobic004G236400 Sobic003G067100 Sobic003G067100 Sobic007G225000--Sobic003G067100 Sobic005G128400 Sobic005G128400 Sobic007G225000--Sobic005G128400 Sobic006G058100 Sobic006G058100 Sobic007G225000--Sobic006G058100 Sobic010G094700 Sobic010G094700 Sobic007G225000--Sobic010G094700 Sobic007G212300 Sobic007G212300 Sobic007G225000--Sobic007G212300 Sobic006G049900 Sobic006G049900 Sobic007G225000--Sobic006G049900 Sobic001G352900 Sobic001G352900 Sobic007G225000--Sobic001G352900 Sobic001G016600 Sobic001G016600 Sobic007G225000--Sobic001G016600 Sobic004G236400--Sobic006G058100 Sobic001G166600 Sobic001G166600 Sobic004G236400--Sobic001G166600 Sobic004G236400--Sobic007G225000 Sobic001G214600 Sobic001G214600 Sobic004G236400--Sobic001G214600 Sobic001G014900 Sobic001G014900 Sobic004G236400--Sobic001G014900 Sobic002G143500 Sobic002G143500 Sobic004G236400--Sobic002G143500 Sobic004G314000 Sobic004G314000 Sobic004G236400--Sobic004G314000 Sobic004G236400--Sobic003G067100 Sobic005G001000 Sobic005G001000 Sobic004G236400--Sobic005G001000 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic003G293200 Sobic003G293200 Sobic005G128400--Sobic003G293200 Sobic003G266001 Sobic003G266001 Sobic005G128400--Sobic003G266001 Sobic001G154900 Sobic001G154900 Sobic005G128400--Sobic001G154900 Sobic005G128400--Sobic001G016600 Sobic001G241200 Sobic001G241200 Sobic005G128400--Sobic001G241200 Sobic007G105100 Sobic007G105100 Sobic005G128400--Sobic007G105100 Sobic010G069100 Sobic010G069100 Sobic005G128400--Sobic010G069100 Sobic001G540400 Sobic001G540400 Sobic005G128400--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic005G128400--Sobic005G008800 Sobic006G058100--Sobic002G143500 Sobic006G058100--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic006G058100--Sobic003G040000 Sobic006G058100--Sobic001G166600 Sobic006G058100--Sobic004G236400 Sobic001G261573 Sobic001G261573 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic004G225600 Sobic004G225600 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic005G191900 Sobic005G191900 Sobic010G094700--Sobic005G191900 Sobic009G109200 Sobic009G109200 Sobic010G094700--Sobic009G109200 Sobic010G279450 Sobic010G279450 Sobic010G094700--Sobic010G279450 Sobic010G079500 Sobic010G079500 Sobic010G094700--Sobic010G079500 Sobic001G529600 Sobic001G529600 Sobic010G094700--Sobic001G529600 Sobic004G096400 Sobic004G096400 Sobic010G094700--Sobic004G096400 Sobic001G311500 Sobic001G311500 Sobic010G094700--Sobic001G311500 Sobic008G132900 Sobic008G132900 Sobic010G094700--Sobic008G132900 Sobic001G393900 Sobic001G393900 Sobic010G094700--Sobic001G393900 Sobic003G194500 Sobic003G194500 Sobic007G212300--Sobic003G194500 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic001G227400 Sobic001G227400 Sobic007G212300--Sobic001G227400 Sobic007G212300--Sobic007G105100 Sobic007G212300--Sobic005G008800 Sobic007G212300--Sobic001G154900 Sobic002G399800 Sobic002G399800 Sobic006G049900--Sobic002G399800 Sobic006G049900--Sobic010G079500 Sobic002G316600 Sobic002G316600 Sobic006G049900--Sobic002G316600 Sobic003G260400 Sobic003G260400 Sobic006G049900--Sobic003G260400 Sobic006G119400 Sobic006G119400 Sobic006G049900--Sobic006G119400 Sobic004G276400 Sobic004G276400 Sobic006G049900--Sobic004G276400 Sobic005G122700 Sobic005G122700 Sobic006G049900--Sobic005G122700 Sobic003G441900 Sobic003G441900 Sobic006G049900--Sobic003G441900 Sobic001G004400 Sobic001G004400 Sobic006G049900--Sobic001G004400 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic001G352900--Sobic003G293200 Sobic005G112300 Sobic005G112300 Sobic001G016600--Sobic005G112300 Sobic001G016600--Sobic005G128400 Sobic001G363500 Sobic001G363500 Sobic001G016600--Sobic001G363500 Sobic001G016600--Sobic001G241200 Sobic001G016600--Sobic007G105100 Sobic001G289600 Sobic001G289600 Sobic001G016600--Sobic001G289600 Sobic003G229500 Sobic003G229500 Sobic001G016600--Sobic003G229500 Sobic001G002000 Sobic001G002000 Sobic001G016600--Sobic001G002000 Sobic001G016600--Sobic001G540400
Octagon: transcription factors


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