Gene annotation
Transcriptome id Sobic.003G260400.6,Sobic.003G260400.3,Sobic.003G260400.1,Sobic.003G260400.4,Sobic.003G260400.5,Sobic.003G260400.2
Synonym LIG6, AtLIG6
Functional annotation ATP dependent DNA ligase family protein, putative, expressed
UniProt A0A1W0VYY3 , A0A1B6Q5F0 , A0A1B6Q5I4 , A0A1W0VYY2 , A0A1B6Q5F6
Pfam PF07522 PF04675 PF01068 PF04675 PF07522 PF04679 PF04679 PF07522 PF04675 PF01068 PF07522 PF04675 PF01068
Panther DB PTHR23240 PTHR23240:SF12 PTHR23240:SF12 PTHR23240
NCBI CDD KOG1361; Predicted hydrolase involved in interstrand cross-link repair
KEGG Orthology K10747; DNA ligase 1
Gene Ontology GO:0005524; ATP binding GO:0003677DNA binding GO:0003910DNA ligase (ATP) activity GO:0006281DNA repair GO:0006310DNA recombination GO:0006310DNA recombination GO:0006281DNA repair GO:0003910DNA ligase (ATP) activity GO:0003677DNA binding GO:0005524ATP binding GO:0006310DNA recombination GO:0006281DNA repair GO:0003910DNA ligase (ATP) activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G66730 : DNA LIGASE 6
RAP-DB (Rice) LOC_Os01g49180.1 : ATP dependent DNA ligase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027997
Brachypodium PNT72586 , PNT72587 , KQK09223 , KQK09224 , KQK09225
Barley HORVU3Hr1G063470.39 , HORVU3Hr1G063470.38 , HORVU3Hr1G063470.31 , HORVU3Hr1G063470.30 , HORVU3Hr1G063470.33 , HORVU3Hr1G063470.32 , HORVU3Hr1G063470.35 , HORVU3Hr1G063470.34 , HORVU3Hr1G063470.37 , HORVU3Hr1G063470.36 , HORVU3Hr1G063470.28 , HORVU3Hr1G063470.29 , HORVU3Hr1G063470.26 , HORVU3Hr1G063470.27 , HORVU3Hr1G063470.24 , HORVU3Hr1G063470.25 , HORVU3Hr1G063470.22 , HORVU3Hr1G063470.23 , HORVU3Hr1G063470.20 , HORVU3Hr1G063470.21 , HORVU3Hr1G063470.59 , HORVU3Hr1G063470.58 , HORVU3Hr1G063470.53 , HORVU3Hr1G063470.52 , HORVU3Hr1G063470.51 , HORVU3Hr1G063470.50 , HORVU3Hr1G063470.57 , HORVU3Hr1G063470.56 , HORVU3Hr1G063470.55 , HORVU3Hr1G063470.54 , HORVU3Hr1G063470.9 , HORVU3Hr1G063470.8 , HORVU3Hr1G063470.7 , HORVU3Hr1G063470.6 , HORVU3Hr1G063470.5 , HORVU3Hr1G063470.4 , HORVU3Hr1G063470.3 , HORVU3Hr1G063470.2 , HORVU3Hr1G063470.1 , HORVU3Hr1G063470.48 , HORVU3Hr1G063470.49 , HORVU3Hr1G063470.40 , HORVU3Hr1G063470.41 , HORVU3Hr1G063470.42 , HORVU3Hr1G063470.43 , HORVU3Hr1G063470.44 , HORVU3Hr1G063470.45 , HORVU3Hr1G063470.46 , HORVU3Hr1G063470.47 , HORVU3Hr1G063470.79 , HORVU3Hr1G063470.78 , HORVU3Hr1G063470.75 , HORVU3Hr1G063470.74 , HORVU3Hr1G063470.77 , HORVU3Hr1G063470.76 , HORVU3Hr1G063470.70 , HORVU3Hr1G063470.73 , HORVU3Hr1G063470.72 , HORVU3Hr1G063470.62 , HORVU3Hr1G063470.63 , HORVU3Hr1G063470.60 , HORVU3Hr1G063470.61 , HORVU3Hr1G063470.66 , HORVU3Hr1G063470.67 , HORVU3Hr1G063470.64 , HORVU3Hr1G063470.65 , HORVU3Hr1G063470.68 , HORVU3Hr1G063470.69 , HORVU3Hr1G063470.80 , HORVU3Hr1G063470.17 , HORVU3Hr1G063470.16 , HORVU3Hr1G063470.15 , HORVU3Hr1G063470.14 , HORVU3Hr1G063470.13 , HORVU3Hr1G063470.12 , HORVU3Hr1G063470.11 , HORVU3Hr1G063470.10 , HORVU3Hr1G063470.19 , HORVU3Hr1G063470.18
Wheat TraesCS3A02G264800 , TraesCS3D02G265000 , TraesCS3A02G264800 , TraesCS3B02G298100 , TraesCS3B02G298100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
2 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
3 Sobic.002G399800 PWWP domain containing protein, expressed -
4 Sobic.003G101700 dnaJ domain containing protein, expressed -
5 Sobic.002G316600 expressed protein -
6 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
7 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
9 Sobic.001G393900 FAD binding domain containing protein, expressed -
10 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
11 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
12 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
13 Sobic.008G018900 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
14 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
15 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
16 Sobic.003G166750 - K15188: cyclin T
17 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
18 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -


Gene co-expression network
sample Sobic003G260400 Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic001G089600 Sobic001G089600 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic010G079500--Sobic002G316600 Sobic009G109200 Sobic009G109200 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic010G079500--Sobic003G260400 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic002G399800--Sobic003G095900 Sobic002G399800--Sobic003G260400 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic002G399800--Sobic009G109200 Sobic003G101700--Sobic002G316600 Sobic003G101700--Sobic010G079500 Sobic002G308700 Sobic002G308700 Sobic003G101700--Sobic002G308700 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic003G101700--Sobic001G230000 Sobic008G054000 Sobic008G054000 Sobic003G101700--Sobic008G054000 Sobic004G134200 Sobic004G134200 Sobic003G101700--Sobic004G134200 Sobic004G334300 Sobic004G334300 Sobic003G101700--Sobic004G334300 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic006G086600 Sobic006G086600 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G089600--Sobic003G095900 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400
Octagon: transcription factors


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