Gene annotation
Transcriptome id Sobic.002G399800.1
Synonym
Functional annotation PWWP domain containing protein, expressed
UniProt A0A1B6QG10
Pfam PF04818 PF12243 PF00855
Panther DB PTHR12550 PTHR12550:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63070 : Tudor/PWWP/MBT domain-containing protein
RAP-DB (Rice) LOC_Os07g46180.1 : PWWP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052329
Brachypodium KQK21610 , KQK14901 , PNT77385 , PNT77384
Barley HORVU0Hr1G002690.1 , HORVU0Hr1G002690.3 , HORVU0Hr1G002690.2
Wheat TraesCS2A02G135600 , TraesCS2B02G159500 , TraesCS2D02G138100 , TraesCS2D02G138100 , TraesCS2D02G138100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
3 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
4 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
5 Sobic.002G179400 DNA binding protein, putative, expressed -
6 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.001G393900 FAD binding domain containing protein, expressed -
9 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
10 Sobic.007G063000 expressed protein -
11 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
12 Sobic.001G004400 - K14290: XPO1, exportin-1
13 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
14 Sobic.003G296900 expressed protein -
15 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
16 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
17 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
18 Sobic.004G322400 WD40-like, putative, expressed -
19 Sobic.002G397500 SAC3/GANP family protein, expressed -
20 Sobic.004G265500 SET domain protein SDG117, putative, expressed -


Gene co-expression network
sample Sobic002G399800 Sobic002G399800 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic003G260400--Sobic010G079500 Sobic003G260400--Sobic003G095900 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic003G260400--Sobic001G393900 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic010G079500--Sobic003G260400 Sobic004G248600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic003G072200 Sobic003G072200 Sobic004G248600--Sobic003G072200 Sobic003G312100 Sobic003G312100 Sobic004G248600--Sobic003G312100 Sobic003G186000 Sobic003G186000 Sobic004G248600--Sobic003G186000 Sobic004G248600--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic004G248600--Sobic002G397500 Sobic005G162500 Sobic005G162500 Sobic004G248600--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic001G089600--Sobic004G248600 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic009G109200--Sobic010G112100
Octagon: transcription factors


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