Gene annotation
Transcriptome id Sobic.003G156500.1
Synonym Sb03g013640
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XJT9
Pfam PF00400 PF08145
Panther DB PTHR17605
NCBI CDD -
KEGG Orthology K14824; ERB1, ribosome biogenesis protein ERB1
Gene Ontology GO:0005515; protein binding GO:0006364rRNA processing


Orthologs (automatic annotation)
TAIR AT2G40360 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g25440.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024473
Brachypodium KQJ98863 , KQK02175
Barley HORVU0Hr1G030920.2 , HORVU0Hr1G030920.3 , HORVU0Hr1G030920.1 , HORVU5Hr1G088940.2 , HORVU5Hr1G088940.3 , HORVU5Hr1G088940.1 , HORVU0Hr1G028010.3 , HORVU0Hr1G028010.2 , HORVU0Hr1G028010.1
Wheat TraesCS5B02G363500 , TraesCS5D02G370000 , TraesCS5A02G360900 , TraesCS5A02G360900 , TraesCS5D02G370000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
2 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
3 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
4 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
5 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
6 Sobic.001G503900 MT-A70 domain containing protein, expressed -
7 Sobic.001G358600 LTV1, putative, expressed K14798: protein LTV1
8 Sobic.010G102600 pentatricopeptide, putative, expressed -
9 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
10 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
11 Sobic.008G011000 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
12 Sobic.010G114900 expressed protein -
13 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
14 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
15 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
16 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
17 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
18 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
19 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
20 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1


Gene co-expression network
sample Sobic003G156500 Sobic003G156500 Sobic001G453400 Sobic001G453400 Sobic003G156500--Sobic001G453400 Sobic009G217200 Sobic009G217200 Sobic003G156500--Sobic009G217200 Sobic001G501400 Sobic001G501400 Sobic003G156500--Sobic001G501400 Sobic010G003400 Sobic010G003400 Sobic003G156500--Sobic010G003400 Sobic003G260400 Sobic003G260400 Sobic003G156500--Sobic003G260400 Sobic001G503900 Sobic001G503900 Sobic003G156500--Sobic001G503900 Sobic001G358600 Sobic001G358600 Sobic003G156500--Sobic001G358600 Sobic010G102600 Sobic010G102600 Sobic003G156500--Sobic010G102600 Sobic004G320500 Sobic004G320500 Sobic003G156500--Sobic004G320500 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic009G217200--Sobic003G156500 Sobic006G221600 Sobic006G221600 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic009G217200--Sobic001G453400 Sobic002G234300 Sobic002G234300 Sobic009G217200--Sobic002G234300 Sobic008G049100 Sobic008G049100 Sobic009G217200--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic009G217200--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic009G217200--Sobic002G071400 Sobic009G217200--Sobic010G114900 Sobic001G501400--Sobic001G358600 Sobic006G128400 Sobic006G128400 Sobic001G501400--Sobic006G128400 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic002G378100 Sobic002G378100 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic010G079500 Sobic010G079500 Sobic003G260400--Sobic010G079500 Sobic003G095900 Sobic003G095900 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic008G011000 Sobic008G011000 Sobic001G503900--Sobic008G011000 Sobic001G503900--Sobic003G156500 Sobic001G503900--Sobic002G316600 Sobic001G503900--Sobic003G260400 Sobic008G185800 Sobic008G185800 Sobic001G503900--Sobic008G185800 Sobic010G169600 Sobic010G169600 Sobic001G503900--Sobic010G169600 Sobic006G184900 Sobic006G184900 Sobic001G503900--Sobic006G184900 Sobic010G136200 Sobic010G136200 Sobic001G503900--Sobic010G136200 Sobic002G388500 Sobic002G388500 Sobic001G503900--Sobic002G388500 Sobic001G358600--Sobic001G501400 Sobic001G358600--Sobic003G156500 Sobic003G275600 Sobic003G275600 Sobic001G358600--Sobic003G275600 Sobic001G358600--Sobic001G173800 Sobic001G358600--Sobic010G003400 Sobic001G358600--Sobic001G453400 Sobic001G358600--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic001G358600--Sobic002G262100 Sobic001G358600--Sobic009G246500 Sobic008G014801 Sobic008G014801 Sobic010G102600--Sobic008G014801 Sobic010G102600--Sobic001G089600 Sobic010G102600--Sobic004G320500 Sobic010G102600--Sobic001G453400 Sobic001G493700 Sobic001G493700 Sobic010G102600--Sobic001G493700 Sobic005G122700 Sobic005G122700 Sobic010G102600--Sobic005G122700 Sobic010G115400 Sobic010G115400 Sobic010G102600--Sobic010G115400 Sobic010G102600--Sobic010G003400 Sobic003G166750 Sobic003G166750 Sobic010G102600--Sobic003G166750 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G340400 Sobic004G340400 Sobic004G320500--Sobic004G340400 Sobic002G256700 Sobic002G256700 Sobic004G320500--Sobic002G256700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic004G320500--Sobic010G102600 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600
Octagon: transcription factors


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