Gene annotation
Transcriptome id Sobic.001G376900.1,Sobic.001G376900.2
Synonym Sb01g035770
Functional annotation utp14 protein, putative, expressed
UniProt A0A1Z5S9N8 , C5X0P5
Pfam PF04615
Panther DB PTHR14150 PTHR14150:SF12
NCBI CDD KOG2172; Uncharacterized conserved protein
KEGG Orthology K14567; U3 small nucleolar RNA-associated protein 14
Gene Ontology GO:0006364; rRNA processing


Orthologs (automatic annotation)
TAIR AT4G02400 : U3 ribonucleoprotein (Utp) family protein
RAP-DB (Rice) LOC_Os03g22320.1 : utp14 protein, putative, expressed
MaizeGDB (Corn) Zm00025a002396
Brachypodium KQK21752 , PNT77437
Barley HORVU7Hr1G080560.6 , HORVU7Hr1G080560.7 , HORVU7Hr1G080560.5 , HORVU7Hr1G080560.8 , HORVU7Hr1G080560.9 , HORVU7Hr1G080560.10 , HORVU7Hr1G080560.11 , HORVU7Hr1G080560.12
Wheat TraesCS7B02G238400 , TraesCS7B02G238400 , TraesCS7B02G238400 , TraesCS7D02G334800 , TraesCS7D02G334800 , TraesCS7D02G334800 , TraesCS7A02G344700 , TraesCS7A02G344700 , TraesCS7A02G344700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
2 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
3 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
4 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
5 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
6 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
7 Sobic.004G224600 expressed protein -
8 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
9 Sobic.001G393900 FAD binding domain containing protein, expressed -
10 Sobic.004G149700 SEY1, putative, expressed -
11 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
12 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.001G453000 no apical meristem protein, putative, expressed -
14 Sobic.008G014801 - -
15 Sobic.010G114900 expressed protein -
16 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
18 Sobic.010G102600 pentatricopeptide, putative, expressed -
19 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
20 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein


Gene co-expression network
sample Sobic001G376900 Sobic001G376900 Sobic003G042400 Sobic003G042400 Sobic001G376900--Sobic003G042400 Sobic001G453400 Sobic001G453400 Sobic001G376900--Sobic001G453400 Sobic007G126500 Sobic007G126500 Sobic001G376900--Sobic007G126500 Sobic006G086600 Sobic006G086600 Sobic001G376900--Sobic006G086600 Sobic009G158100 Sobic009G158100 Sobic001G376900--Sobic009G158100 Sobic007G168300 Sobic007G168300 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G052400 Sobic001G052400 Sobic001G376900--Sobic001G052400 Sobic001G393900 Sobic001G393900 Sobic001G376900--Sobic001G393900 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic003G042400--Sobic007G126500 Sobic010G003400 Sobic010G003400 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900 Sobic007G126500--Sobic001G376900 Sobic007G126500--Sobic003G042400 Sobic006G013100 Sobic006G013100 Sobic007G126500--Sobic006G013100 Sobic001G453000 Sobic001G453000 Sobic007G126500--Sobic001G453000 Sobic007G126500--Sobic001G453400 Sobic007G126500--Sobic001G393900 Sobic007G126500--Sobic009G158100 Sobic007G126500--Sobic001G145400 Sobic007G126500--Sobic007G168300 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic009G101200 Sobic009G101200 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic003G095900 Sobic003G095900 Sobic009G158100--Sobic003G095900 Sobic009G158100--Sobic003G042400 Sobic009G158100--Sobic001G089600 Sobic006G267600 Sobic006G267600 Sobic009G158100--Sobic006G267600 Sobic002G275600 Sobic002G275600 Sobic009G158100--Sobic002G275600 Sobic009G158100--Sobic001G376900 Sobic009G158100--Sobic004G320500 Sobic004G260100 Sobic004G260100 Sobic009G158100--Sobic004G260100 Sobic010G275500 Sobic010G275500 Sobic009G158100--Sobic010G275500 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic007G168300--Sobic001G453000 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic006G002800 Sobic006G002800 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic004G224600--Sobic006G086600 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic001G052400--Sobic003G042400 Sobic004G340400 Sobic004G340400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic001G052400--Sobic006G125900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400
Octagon: transcription factors


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