Gene annotation
Transcriptome id Sobic.004G149700.1,Sobic.004G149700.2
Synonym Sb04g019800, RHD3
Functional annotation SEY1, putative, expressed
UniProt C5XSF6
Pfam PF05879
Panther DB PTHR11649 PTHR11649:SF62
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13870 : Root hair defective 3 GTP-binding protein (RHD3)
RAP-DB (Rice) LOC_Os01g39310.1 : SEY1, putative, expressed
MaizeGDB (Corn) Zm00025a028458 , Zm00025a038395
Brachypodium PNT72230 , KQK08394 , KQK08393
Barley HORVU3Hr1G049960.9 , HORVU3Hr1G049960.8 , HORVU3Hr1G049960.5 , HORVU3Hr1G049960.4 , HORVU3Hr1G049960.6 , HORVU3Hr1G049960.1 , HORVU3Hr1G049960.3 , HORVU3Hr1G049960.2 , HORVU3Hr1G049960.19 , HORVU3Hr1G049960.11 , HORVU3Hr1G049960.10 , HORVU3Hr1G049960.20 , HORVU3Hr1G049960.21 , HORVU3Hr1G049960.13 , HORVU3Hr1G049960.12 , HORVU3Hr1G049960.15 , HORVU3Hr1G049960.14 , HORVU3Hr1G049960.17
Wheat TraesCS3B02G237000 , TraesCS3A02G204900 , TraesCS1A02G003200 , TraesCS3D02G210500 , TraesCS3D02G210500
Populus PNT55596 , PNT43534 , PNT55597 , PNT55595


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cDNA sequences
Sobic.004G149700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G148932 - -
2 Sobic.002G179400 DNA binding protein, putative, expressed -
3 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
4 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
5 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
6 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
7 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
8 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
9 Sobic.010G114900 expressed protein -
10 Sobic.010G279800 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
11 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
12 Sobic.003G007300 KH domain containing protein, putative, expressed K18666: activating signal cointegrator complex subunit 1
13 Sobic.004G135400 expressed protein -
14 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
15 Sobic.004G005100 peptidase family C78 domain containing protein, expressed -
16 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
17 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
18 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
19 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
20 Sobic.004G332400 neurochondrin family protein, putative, expressed -


Gene co-expression network
sample Sobic004G149700 Sobic004G149700 Sobic010G148932 Sobic010G148932 Sobic004G149700--Sobic010G148932 Sobic002G179400 Sobic002G179400 Sobic004G149700--Sobic002G179400 Sobic002G042600 Sobic002G042600 Sobic004G149700--Sobic002G042600 Sobic010G080700 Sobic010G080700 Sobic004G149700--Sobic010G080700 Sobic001G376900 Sobic001G376900 Sobic004G149700--Sobic001G376900 Sobic001G065100 Sobic001G065100 Sobic004G149700--Sobic001G065100 Sobic001G453400 Sobic001G453400 Sobic004G149700--Sobic001G453400 Sobic004G277200 Sobic004G277200 Sobic004G149700--Sobic004G277200 Sobic010G114900 Sobic010G114900 Sobic004G149700--Sobic010G114900 Sobic003G312100 Sobic003G312100 Sobic010G148932--Sobic003G312100 Sobic010G148932--Sobic002G042600 Sobic003G229500 Sobic003G229500 Sobic010G148932--Sobic003G229500 Sobic002G397500 Sobic002G397500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic001G137000 Sobic001G137000 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G179400--Sobic002G042600 Sobic004G053500 Sobic004G053500 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic003G233400 Sobic003G233400 Sobic002G179400--Sobic003G233400 Sobic002G133300 Sobic002G133300 Sobic002G179400--Sobic002G133300 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic002G042600--Sobic001G065100 Sobic002G042600--Sobic006G184900 Sobic002G042600--Sobic008G098900 Sobic002G401500 Sobic002G401500 Sobic002G042600--Sobic002G401500 Sobic002G042600--Sobic002G179400 Sobic002G042600--Sobic004G322400 Sobic002G042600--Sobic002G429300 Sobic008G088872 Sobic008G088872 Sobic002G042600--Sobic008G088872 Sobic001G370900 Sobic001G370900 Sobic002G042600--Sobic001G370900 Sobic003G375200 Sobic003G375200 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic005G162500 Sobic005G162500 Sobic010G080700--Sobic005G162500 Sobic010G080700--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic008G124800 Sobic008G124800 Sobic010G080700--Sobic008G124800 Sobic010G080700--Sobic004G322400 Sobic004G131300 Sobic004G131300 Sobic010G080700--Sobic004G131300 Sobic003G042400 Sobic003G042400 Sobic001G376900--Sobic003G042400 Sobic001G376900--Sobic001G453400 Sobic007G126500 Sobic007G126500 Sobic001G376900--Sobic007G126500 Sobic006G086600 Sobic006G086600 Sobic001G376900--Sobic006G086600 Sobic009G158100 Sobic009G158100 Sobic001G376900--Sobic009G158100 Sobic007G168300 Sobic007G168300 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G052400 Sobic001G052400 Sobic001G376900--Sobic001G052400 Sobic001G393900 Sobic001G393900 Sobic001G376900--Sobic001G393900 Sobic001G065100--Sobic002G042600 Sobic001G065100--Sobic002G179400 Sobic001G263600 Sobic001G263600 Sobic001G065100--Sobic001G263600 Sobic001G065100--Sobic002G401500 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic001G065100--Sobic004G322400 Sobic005G062200 Sobic005G062200 Sobic001G065100--Sobic005G062200 Sobic003G296900 Sobic003G296900 Sobic001G065100--Sobic003G296900 Sobic010G003400 Sobic010G003400 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic004G135400 Sobic004G135400 Sobic004G277200--Sobic004G135400 Sobic008G099800 Sobic008G099800 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic007G225100 Sobic007G225100 Sobic004G277200--Sobic007G225100 Sobic003G104000 Sobic003G104000 Sobic004G277200--Sobic003G104000 Sobic006G208500 Sobic006G208500 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic006G200700 Sobic006G200700 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic010G114900--Sobic001G453400 Sobic010G114900--Sobic003G312100 Sobic010G114900--Sobic007G168300 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic010G114900--Sobic001G052400
Octagon: transcription factors


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