Gene annotation
Transcriptome id Sobic.003G007300.3
Synonym Sb03g000800
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A1W0VVA7
Pfam PF00013 PF10469
Panther DB PTHR13360 PTHR13360:SF1
NCBI CDD KOG2814; Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family)
KEGG Orthology K18666; activating signal cointegrator complex subunit 1
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G16230 : Predicted eukaryotic LigT
RAP-DB (Rice) LOC_Os01g13100.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022817 , Zm00025a022819
Brachypodium KQK03427
Barley -
Wheat TraesCS3A02G434500 , TraesCS3A02G155600 , TraesCS3A02G155600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G149700 SEY1, putative, expressed -
2 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
3 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
4 Sobic.008G002500 RCD1, putative, expressed -
5 Sobic.004G332400 neurochondrin family protein, putative, expressed -
6 Sobic.002G399800 PWWP domain containing protein, expressed -
7 Sobic.010G148932 - -
8 Sobic.002G299400 PPR repeat domain containing protein, putative, expressed -
9 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
10 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
11 Sobic.001G393900 FAD binding domain containing protein, expressed -
12 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
13 Sobic.003G120800 expressed protein -
14 Sobic.004G123400 MYB family transcription factor, putative, expressed K09420: MYB, transcriptional activator Myb
15 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
16 Sobic.002G126300 expressed protein -
17 Sobic.003G294600 Homeobox domain containing protein, expressed -
18 Sobic.007G146100 formin, putative, expressed -
19 Sobic.006G125500 expressed protein -
20 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1


Gene co-expression network
sample Sobic003G007300 Sobic003G007300 Sobic004G149700 Sobic004G149700 Sobic003G007300--Sobic004G149700 Sobic010G080700 Sobic010G080700 Sobic003G007300--Sobic010G080700 Sobic002G275600 Sobic002G275600 Sobic003G007300--Sobic002G275600 Sobic008G002500 Sobic008G002500 Sobic003G007300--Sobic008G002500 Sobic004G332400 Sobic004G332400 Sobic003G007300--Sobic004G332400 Sobic002G399800 Sobic002G399800 Sobic003G007300--Sobic002G399800 Sobic010G148932 Sobic010G148932 Sobic003G007300--Sobic010G148932 Sobic002G299400 Sobic002G299400 Sobic003G007300--Sobic002G299400 Sobic005G160100 Sobic005G160100 Sobic003G007300--Sobic005G160100 Sobic004G149700--Sobic010G148932 Sobic002G179400 Sobic002G179400 Sobic004G149700--Sobic002G179400 Sobic002G042600 Sobic002G042600 Sobic004G149700--Sobic002G042600 Sobic004G149700--Sobic010G080700 Sobic001G376900 Sobic001G376900 Sobic004G149700--Sobic001G376900 Sobic001G065100 Sobic001G065100 Sobic004G149700--Sobic001G065100 Sobic001G453400 Sobic001G453400 Sobic004G149700--Sobic001G453400 Sobic004G277200 Sobic004G277200 Sobic004G149700--Sobic004G277200 Sobic010G114900 Sobic010G114900 Sobic004G149700--Sobic010G114900 Sobic003G375200 Sobic003G375200 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic005G162500 Sobic005G162500 Sobic010G080700--Sobic005G162500 Sobic010G080700--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic008G124800 Sobic008G124800 Sobic010G080700--Sobic008G124800 Sobic004G322400 Sobic004G322400 Sobic010G080700--Sobic004G322400 Sobic004G131300 Sobic004G131300 Sobic010G080700--Sobic004G131300 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic008G014500 Sobic008G014500 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic006G040800 Sobic006G040800 Sobic008G002500--Sobic006G040800 Sobic001G063700 Sobic001G063700 Sobic008G002500--Sobic001G063700 Sobic001G354600 Sobic001G354600 Sobic008G002500--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic008G002500--Sobic003G360400 Sobic009G088000 Sobic009G088000 Sobic008G002500--Sobic009G088000 Sobic003G188400 Sobic003G188400 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic001G433800 Sobic001G433800 Sobic008G002500--Sobic001G433800 Sobic008G002500--Sobic004G332400 Sobic004G332400--Sobic006G040800 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic001G346900 Sobic001G346900 Sobic004G332400--Sobic001G346900 Sobic008G147200 Sobic008G147200 Sobic004G332400--Sobic008G147200 Sobic004G040200 Sobic004G040200 Sobic004G332400--Sobic004G040200 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic003G312100 Sobic003G312100 Sobic010G148932--Sobic003G312100 Sobic010G148932--Sobic002G042600 Sobic003G229500 Sobic003G229500 Sobic010G148932--Sobic003G229500 Sobic010G148932--Sobic002G397500 Sobic008G098900 Sobic008G098900 Sobic010G148932--Sobic008G098900 Sobic001G117200 Sobic001G117200 Sobic010G148932--Sobic001G117200 Sobic001G137000 Sobic001G137000 Sobic010G148932--Sobic001G137000 Sobic007G062800 Sobic007G062800 Sobic010G148932--Sobic007G062800 Sobic001G457900 Sobic001G457900 Sobic010G148932--Sobic001G457900 Sobic006G086600 Sobic006G086600 Sobic002G299400--Sobic006G086600 Sobic002G299400--Sobic005G160100 Sobic001G214600 Sobic001G214600 Sobic002G299400--Sobic001G214600 Sobic001G145400 Sobic001G145400 Sobic002G299400--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic002G299400--Sobic009G101200 Sobic002G299400--Sobic001G089600 Sobic006G185200 Sobic006G185200 Sobic002G299400--Sobic006G185200 Sobic001G081000 Sobic001G081000 Sobic002G299400--Sobic001G081000 Sobic002G299400--Sobic010G080700 Sobic005G160100--Sobic002G275600 Sobic005G160100--Sobic001G214600 Sobic005G160100--Sobic001G089600 Sobic004G260100 Sobic004G260100 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic005G160100--Sobic010G059500 Sobic009G251200 Sobic009G251200 Sobic005G160100--Sobic009G251200 Sobic005G160100--Sobic003G260400
Octagon: transcription factors


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