Gene annotation
Transcriptome id Sobic.005G160100.2,Sobic.005G160100.1
Synonym AtRFC1, RFC1, Sb05g022200
Functional annotation RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed
UniProt A0A1B6PSU4 , A0A1B6PSW2
Pfam PF00004 PF00533 PF08519 PF00533 PF08519
Panther DB PTHR23389 PTHR23389:SF10
NCBI CDD KOG1968; Replication factor C, subunit RFC1 (large subunit)
KEGG Orthology K10754; replication factor C subunit 1
Gene Ontology GO:0005524; ATP binding GO:0006260DNA replication GO:0005663DNA replication factor C complex GO:0003689DNA clamp loader activity GO:0006260DNA replication GO:0005663DNA replication factor C complex GO:0005524ATP binding GO:0003689DNA clamp loader activity


Orthologs (automatic annotation)
TAIR AT5G22010 : replication factor C1
RAP-DB (Rice) LOC_Os11g36390.1 : RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed
MaizeGDB (Corn) Zm00025a015782
Brachypodium KQJ88150 , PNT63444
Barley HORVU7Hr1G091790.3 , HORVU7Hr1G091790.2 , HORVU7Hr1G091790.1 , HORVU7Hr1G091790.7 , HORVU7Hr1G091790.6 , HORVU7Hr1G091790.13 , HORVU7Hr1G091790.12 , HORVU7Hr1G091790.11 , HORVU7Hr1G091790.14 , HORVU7Hr1G091790.9 , HORVU7Hr1G091790.8 , HORVU7Hr1G091790.5 , HORVU7Hr1G091790.4
Wheat TraesCS7A02G386700 , TraesCS7A02G386700 , TraesCS7D02G383200 , TraesCS7B02G289500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
2 Sobic.001G214600 expressed protein -
3 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
4 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
5 Sobic.003G171500 dnaJ domain containing protein, expressed -
6 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
8 Sobic.009G251200 expressed protein -
9 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
10 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
11 Sobic.002G299400 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
13 Sobic.005G027840 most plausible candidate gene for Rf5(PubMedID : 36275935) K17964: leucine-rich PPR motif-containing protein, mitochondrial
14 Sobic.009G084900 expressed protein -
15 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
16 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
17 Sobic.002G298100 expressed protein -
18 Sobic.002G399800 PWWP domain containing protein, expressed -
19 Sobic.010G147833 - -
20 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G160100 Sobic005G160100 Sobic002G275600 Sobic002G275600 Sobic005G160100--Sobic002G275600 Sobic001G214600 Sobic001G214600 Sobic005G160100--Sobic001G214600 Sobic001G089600 Sobic001G089600 Sobic005G160100--Sobic001G089600 Sobic004G260100 Sobic004G260100 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic009G251200 Sobic009G251200 Sobic005G160100--Sobic009G251200 Sobic003G260400 Sobic003G260400 Sobic005G160100--Sobic003G260400 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic008G014500 Sobic008G014500 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic001G214600--Sobic004G260100 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic010G147833 Sobic010G147833 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic001G089600--Sobic009G084900 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic006G055200 Sobic006G055200 Sobic003G171500--Sobic006G055200 Sobic003G171500--Sobic006G086600 Sobic007G207200 Sobic007G207200 Sobic003G171500--Sobic007G207200 Sobic003G171500--Sobic002G317200 Sobic003G171500--Sobic005G160100 Sobic007G220300 Sobic007G220300 Sobic003G171500--Sobic007G220300 Sobic003G032700 Sobic003G032700 Sobic003G171500--Sobic003G032700 Sobic001G020000 Sobic001G020000 Sobic003G171500--Sobic001G020000 Sobic004G131300 Sobic004G131300 Sobic003G171500--Sobic004G131300 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic010G059500--Sobic006G234700 Sobic001G145400 Sobic001G145400 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic002G298100 Sobic002G298100 Sobic009G251200--Sobic002G298100 Sobic003G133900 Sobic003G133900 Sobic009G251200--Sobic003G133900 Sobic009G251200--Sobic005G160100 Sobic001G081000 Sobic001G081000 Sobic009G251200--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic009G251200--Sobic006G226300 Sobic004G309900 Sobic004G309900 Sobic009G251200--Sobic004G309900 Sobic006G185200 Sobic006G185200 Sobic009G251200--Sobic006G185200 Sobic001G393900 Sobic001G393900 Sobic009G251200--Sobic001G393900 Sobic009G251200--Sobic008G014500 Sobic010G079500 Sobic010G079500 Sobic003G260400--Sobic010G079500 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic003G260400--Sobic001G393900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.