Gene annotation
Transcriptome id Sobic.005G027840.1
Synonym Rf5, fertility restorer Rf5
Functional annotation most plausible candidate gene for Rf5 (PubMedID : 36275935)
UniProt A0A1Z5RGH0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF302
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62910 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g35240.1 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G214600 expressed protein -
2 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
3 Sobic.006G083300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K18995: ATP-dependent RNA helicase DHX29
4 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
5 Sobic.001G050600 expressed protein -
6 Sobic.010G147833 - -
7 Sobic.002G397500 SAC3/GANP family protein, expressed -
8 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
9 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
10 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
12 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
13 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.001G016600 FAR1 family protein, expressed -
15 Sobic.001G219900 expressed protein -
16 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
18 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
19 Sobic.001G004400 - K14290: XPO1, exportin-1
20 Sobic.001G347500 expressed protein -


Gene co-expression network
sample Sobic005G027840 Sobic005G027840 Sobic001G214600 Sobic001G214600 Sobic005G027840--Sobic001G214600 Sobic005G160100 Sobic005G160100 Sobic005G027840--Sobic005G160100 Sobic006G083300 Sobic006G083300 Sobic005G027840--Sobic006G083300 Sobic004G260100 Sobic004G260100 Sobic005G027840--Sobic004G260100 Sobic001G050600 Sobic001G050600 Sobic005G027840--Sobic001G050600 Sobic010G147833 Sobic010G147833 Sobic005G027840--Sobic010G147833 Sobic002G397500 Sobic002G397500 Sobic005G027840--Sobic002G397500 Sobic007G165600 Sobic007G165600 Sobic005G027840--Sobic007G165600 Sobic001G089600 Sobic001G089600 Sobic005G027840--Sobic001G089600 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic004G223600 Sobic004G223600 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic002G275600 Sobic002G275600 Sobic005G160100--Sobic002G275600 Sobic005G160100--Sobic001G214600 Sobic005G160100--Sobic001G089600 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic009G251200 Sobic009G251200 Sobic005G160100--Sobic009G251200 Sobic003G260400 Sobic003G260400 Sobic005G160100--Sobic003G260400 Sobic009G109200 Sobic009G109200 Sobic006G083300--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic006G083300--Sobic004G248600 Sobic001G004400 Sobic001G004400 Sobic006G083300--Sobic001G004400 Sobic007G098500 Sobic007G098500 Sobic006G083300--Sobic007G098500 Sobic001G110600 Sobic001G110600 Sobic006G083300--Sobic001G110600 Sobic006G083300--Sobic001G050600 Sobic002G396500 Sobic002G396500 Sobic006G083300--Sobic002G396500 Sobic006G083300--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic006G083300--Sobic001G352900 Sobic004G260100--Sobic001G214600 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic004G260100--Sobic001G089600 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic004G260100--Sobic010G147833 Sobic004G023100 Sobic004G023100 Sobic004G260100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G260100--Sobic010G053600 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G058700 Sobic001G058700 Sobic001G050600--Sobic001G058700 Sobic001G050600--Sobic001G219900 Sobic007G172400 Sobic007G172400 Sobic001G050600--Sobic007G172400 Sobic001G137000 Sobic001G137000 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic008G092600 Sobic008G092600 Sobic001G050600--Sobic008G092600 Sobic003G259100 Sobic003G259100 Sobic001G050600--Sobic003G259100 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic002G397500--Sobic009G109200 Sobic003G072200 Sobic003G072200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic007G103100 Sobic007G103100 Sobic007G165600--Sobic007G103100 Sobic006G055200 Sobic006G055200 Sobic007G165600--Sobic006G055200 Sobic007G165600--Sobic001G004400 Sobic005G122700 Sobic005G122700 Sobic007G165600--Sobic005G122700 Sobic002G133300 Sobic002G133300 Sobic007G165600--Sobic002G133300 Sobic009G056200 Sobic009G056200 Sobic007G165600--Sobic009G056200 Sobic001G194200 Sobic001G194200 Sobic007G165600--Sobic001G194200 Sobic002G316600 Sobic002G316600 Sobic007G165600--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G165600--Sobic003G186000 Sobic003G095900 Sobic003G095900 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic001G089600--Sobic004G260100 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic001G089600--Sobic009G084900
Octagon: transcription factors


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