Gene annotation
Transcriptome id Sobic.009G213200.2
Synonym GRP23
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5R3L7
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF393
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10270 : glutamine-rich protein 23
RAP-DB (Rice) LOC_Os05g30240.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006839
Brachypodium KQK16982 , KQK10479
Barley HORVU2Hr1G011400.2 , HORVU2Hr1G011400.1 , HORVU2Hr1G011350.4 , HORVU2Hr1G011350.2 , HORVU2Hr1G011350.3 , HORVU2Hr1G011350.1
Wheat TraesCS2A02G524300 , TraesCS2B02G554300 , TraesCS2B02G076200 , TraesCS2D02G527300 , TraesCS2A02G063500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
2 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
3 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
4 Sobic.001G214600 expressed protein -
5 Sobic.002G373950 - -
6 Sobic.010G147833 - -
7 Sobic.005G160100 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
8 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
9 Sobic.009G251200 expressed protein -
10 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
11 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
12 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
13 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.002G298100 expressed protein -
15 Sobic.001G393900 FAD binding domain containing protein, expressed -
16 Sobic.002G309200 FAR1 family protein, expressed -
17 Sobic.005G191900 transporter family protein, putative, expressed -
18 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
19 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
20 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius


Gene co-expression network
sample Sobic009G213200 Sobic009G213200 Sobic006G185200 Sobic006G185200 Sobic009G213200--Sobic006G185200 Sobic002G378100 Sobic002G378100 Sobic009G213200--Sobic002G378100 Sobic007G097400 Sobic007G097400 Sobic009G213200--Sobic007G097400 Sobic001G214600 Sobic001G214600 Sobic009G213200--Sobic001G214600 Sobic002G373950 Sobic002G373950 Sobic009G213200--Sobic002G373950 Sobic010G147833 Sobic010G147833 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic006G231800 Sobic006G231800 Sobic009G213200--Sobic006G231800 Sobic009G251200 Sobic009G251200 Sobic009G213200--Sobic009G251200 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic006G185200--Sobic001G214600 Sobic006G185200--Sobic009G213200 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic002G378100--Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic007G097400--Sobic006G128400 Sobic006G125900 Sobic006G125900 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic001G214600--Sobic004G260100 Sobic009G247400 Sobic009G247400 Sobic001G214600--Sobic009G247400 Sobic009G084900 Sobic009G084900 Sobic001G214600--Sobic009G084900 Sobic001G214600--Sobic010G147833 Sobic002G317200 Sobic002G317200 Sobic001G214600--Sobic002G317200 Sobic001G214600--Sobic004G223600 Sobic006G234700 Sobic006G234700 Sobic001G214600--Sobic006G234700 Sobic001G219900 Sobic001G219900 Sobic001G214600--Sobic001G219900 Sobic001G493200 Sobic001G493200 Sobic001G214600--Sobic001G493200 Sobic006G086600 Sobic006G086600 Sobic002G373950--Sobic006G086600 Sobic010G003400 Sobic010G003400 Sobic002G373950--Sobic010G003400 Sobic001G453400 Sobic001G453400 Sobic002G373950--Sobic001G453400 Sobic002G373950--Sobic009G213200 Sobic010G174700 Sobic010G174700 Sobic002G373950--Sobic010G174700 Sobic003G260400 Sobic003G260400 Sobic002G373950--Sobic003G260400 Sobic010G115400 Sobic010G115400 Sobic002G373950--Sobic010G115400 Sobic001G089600 Sobic001G089600 Sobic002G373950--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic002G373950--Sobic010G102600 Sobic010G147833--Sobic001G214600 Sobic010G147833--Sobic004G260100 Sobic001G170100 Sobic001G170100 Sobic010G147833--Sobic001G170100 Sobic007G019300 Sobic007G019300 Sobic010G147833--Sobic007G019300 Sobic001G426600 Sobic001G426600 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic007G120500 Sobic007G120500 Sobic010G147833--Sobic007G120500 Sobic001G287500 Sobic001G287500 Sobic010G147833--Sobic001G287500 Sobic002G275600 Sobic002G275600 Sobic005G160100--Sobic002G275600 Sobic005G160100--Sobic001G214600 Sobic005G160100--Sobic001G089600 Sobic005G160100--Sobic004G260100 Sobic003G171500 Sobic003G171500 Sobic005G160100--Sobic003G171500 Sobic004G096400 Sobic004G096400 Sobic005G160100--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic005G160100--Sobic010G059500 Sobic005G160100--Sobic009G251200 Sobic005G160100--Sobic003G260400 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic006G231800--Sobic002G378100 Sobic006G231800--Sobic006G185200 Sobic006G231800--Sobic009G213200 Sobic006G049600 Sobic006G049600 Sobic006G231800--Sobic006G049600 Sobic001G119600 Sobic001G119600 Sobic006G231800--Sobic001G119600 Sobic006G231800--Sobic010G003400 Sobic006G231800--Sobic002G373950 Sobic002G298100 Sobic002G298100 Sobic009G251200--Sobic002G298100 Sobic003G133900 Sobic003G133900 Sobic009G251200--Sobic003G133900 Sobic009G251200--Sobic005G160100 Sobic001G081000 Sobic001G081000 Sobic009G251200--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic009G251200--Sobic006G226300 Sobic004G309900 Sobic004G309900 Sobic009G251200--Sobic004G309900 Sobic009G251200--Sobic006G185200 Sobic001G393900 Sobic001G393900 Sobic009G251200--Sobic001G393900 Sobic008G014500 Sobic008G014500 Sobic009G251200--Sobic008G014500
Octagon: transcription factors


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