Gene annotation
Transcriptome id Sobic.002G378100.1
Synonym Sb02g039520
Functional annotation DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed
UniProt A0A1W0W7H2
Pfam PF14700 PF00940
Panther DB PTHR10102 PTHR10102:SF3
NCBI CDD -
KEGG Orthology K10908; POLRMT, DNA-directed RNA polymerase, mitochondrial
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G15700 : DNA/RNA polymerases superfamily protein
RAP-DB (Rice) LOC_Os09g07120.1 : DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048781
Brachypodium KQJ86996 , KQJ86997
Barley HORVU5Hr1G051530.19 , HORVU5Hr1G051530.18 , HORVU5Hr1G051530.11 , HORVU5Hr1G051530.10 , HORVU5Hr1G051530.13 , HORVU5Hr1G051530.12 , HORVU5Hr1G051530.15 , HORVU5Hr1G051530.14 , HORVU5Hr1G051530.17 , HORVU5Hr1G051530.16 , HORVU5Hr1G051530.4 , HORVU5Hr1G051530.9 , HORVU5Hr1G051530.8 , HORVU5Hr1G051530.5 , HORVU5Hr1G051530.7 , HORVU5Hr1G051530.6 , HORVU5Hr1G051530.1 , HORVU5Hr1G051530.3 , HORVU5Hr1G051530.2 , HORVU5Hr1G051530.30 , HORVU5Hr1G051530.24 , HORVU5Hr1G051530.25 , HORVU5Hr1G051530.26 , HORVU5Hr1G051530.27 , HORVU5Hr1G051530.20 , HORVU5Hr1G051530.21 , HORVU5Hr1G051530.22 , HORVU5Hr1G051530.23 , HORVU5Hr1G051530.28 , HORVU5Hr1G051530.29
Wheat TraesCS5B02G164300 , TraesCS5B02G164300 , TraesCS5D02G171600 , TraesCS5D02G171600 , TraesCS5A02G167300 , TraesCS5A02G167300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
2 Sobic.006G128400 PPR repeat containing protein, expressed -
3 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
6 Sobic.002G092050 - -
7 Sobic.004G027300 expressed protein -
8 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
9 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
10 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
11 Sobic.003G014700 pentatricopeptide, putative, expressed -
12 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
13 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
14 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
15 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
16 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
17 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
18 Sobic.001G049800 DDT domain containing protein, putative, expressed -
19 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
20 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5


Gene co-expression network
sample Sobic002G378100 Sobic002G378100 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic001G049800 Sobic001G049800 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic006G111200 Sobic006G111200 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic007G060600 Sobic007G060600 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic001G453500 Sobic001G453500 Sobic004G151000--Sobic001G453500 Sobic006G059500 Sobic006G059500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic010G083900--Sobic002G378100 Sobic001G322600 Sobic001G322600 Sobic010G083900--Sobic001G322600 Sobic010G083900--Sobic001G049800 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic010G083900--Sobic004G151000 Sobic003G014700 Sobic003G014700 Sobic010G083900--Sobic003G014700 Sobic005G028300 Sobic005G028300 Sobic010G083900--Sobic005G028300 Sobic010G083900--Sobic001G119600 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic004G036700 Sobic004G036700 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic006G198600 Sobic006G198600 Sobic001G422500--Sobic006G198600 Sobic001G422500--Sobic003G123200 Sobic009G213200--Sobic006G185200 Sobic009G213200--Sobic002G378100 Sobic009G213200--Sobic007G097400 Sobic009G213200--Sobic001G214600 Sobic002G373950 Sobic002G373950 Sobic009G213200--Sobic002G373950 Sobic009G213200--Sobic010G147833 Sobic005G160100 Sobic005G160100 Sobic009G213200--Sobic005G160100 Sobic009G213200--Sobic006G231800 Sobic009G251200 Sobic009G251200 Sobic009G213200--Sobic009G251200
Octagon: transcription factors


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