Gene annotation
Transcriptome id Sobic.002G262100.1
Synonym Sb02g029690
Functional annotation -
UniProt A0A1B6QDK7
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF277
NCBI CDD -
KEGG Orthology K13181; DDX27, ATP-dependent RNA helicase DDX27
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G16630 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os12g29660.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a047626 , Zm00025a014331
Brachypodium KQJ86727
Barley HORVU5Hr1G093160.1 , HORVU5Hr1G093160.2 , HORVU5Hr1G093160.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
2 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
3 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
4 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
5 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
6 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
7 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
8 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
9 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
10 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
11 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
12 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
13 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
14 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
15 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
16 Sobic.010G224700 - K17680: twinkle protein
17 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
18 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
19 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
20 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase


Gene co-expression network
sample Sobic002G262100 Sobic002G262100 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic004G173100 Sobic004G173100 Sobic002G262100--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G262100--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic002G262100--Sobic006G198600 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic002G399200--Sobic002G262100 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic001G422500--Sobic006G231800 Sobic001G422500--Sobic010G083900 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic001G422500--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic001G157300--Sobic009G071700 Sobic001G157300--Sobic002G262100 Sobic001G157300--Sobic006G198600 Sobic001G157300--Sobic001G119600 Sobic006G251600 Sobic006G251600 Sobic001G157300--Sobic006G251600 Sobic001G157300--Sobic003G123200 Sobic007G137350 Sobic007G137350 Sobic001G157300--Sobic007G137350 Sobic001G157300--Sobic003G425100 Sobic001G157300--Sobic008G049100 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300
Octagon: transcription factors


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