Gene annotation
Transcriptome id Sobic.001G157300.1
Synonym Sb01g013700, YAO
Functional annotation expressed protein
UniProt C5WR85
Pfam PF00400
Panther DB PTHR19865 PTHR19865:SF0
NCBI CDD KOG0299; U3 snoRNP-associated protein (contains WD40 repeats)
KEGG Orthology K14793; ribosomal RNA-processing protein 9
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G05410 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g42770.1 : expressed protein
MaizeGDB (Corn) Zm00025a007297 , Zm00025a017263
Brachypodium KQJ85805
Barley HORVU5Hr1G010440.6 , HORVU5Hr1G010440.4 , HORVU5Hr1G010440.5 , HORVU5Hr1G010440.2 , HORVU5Hr1G010440.3 , HORVU5Hr1G010440.1
Wheat TraesCS5A02G043100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
3 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
4 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
5 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
6 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
7 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
8 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
9 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
10 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.002G206500 queuine tRNA-ribosyltransferase, putative, expressed K00773: tgt, queuine tRNA-ribosyltransferase
12 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
13 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
14 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
15 Sobic.010G161525 - -
16 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
17 Sobic.006G225400 zinc finger protein, putative, expressed -
18 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
19 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
20 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1


Gene co-expression network
sample Sobic001G157300 Sobic001G157300 Sobic009G071700 Sobic009G071700 Sobic001G157300--Sobic009G071700 Sobic002G262100 Sobic002G262100 Sobic001G157300--Sobic002G262100 Sobic006G198600 Sobic006G198600 Sobic001G157300--Sobic006G198600 Sobic001G119600 Sobic001G119600 Sobic001G157300--Sobic001G119600 Sobic006G251600 Sobic006G251600 Sobic001G157300--Sobic006G251600 Sobic003G123200 Sobic003G123200 Sobic001G157300--Sobic003G123200 Sobic007G137350 Sobic007G137350 Sobic001G157300--Sobic007G137350 Sobic003G425100 Sobic003G425100 Sobic001G157300--Sobic003G425100 Sobic008G049100 Sobic008G049100 Sobic001G157300--Sobic008G049100 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic001G119600--Sobic008G049100 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic007G137350--Sobic009G071700 Sobic007G137350--Sobic004G173100 Sobic007G137350--Sobic007G092200 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic004G082700 Sobic004G082700 Sobic007G137350--Sobic004G082700 Sobic007G137350--Sobic006G251600 Sobic007G137350--Sobic001G157300 Sobic007G137350--Sobic006G198600 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300
Octagon: transcription factors


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