Gene annotation
Transcriptome id Sobic.004G173100.3,Sobic.004G173100.2,Sobic.004G173100.4,Sobic.004G173100.1
Synonym CER7, Sb04g022380, G3
Functional annotation exosome complex exonuclease, putative, expressed
UniProt A0A194YQA5 , A0A194YRB7
Pfam PF03725 PF01138
Panther DB PTHR11097 PTHR11097:SF14
NCBI CDD KOG1614; Exosomal 3'-5' exoribonuclease complex, subunit Rrp45
KEGG Orthology K03678; RRP45, exosome complex component RRP45
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G60500 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os02g34570.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a020613 , Zm00025a050633 , Zm00025a026550 , Zm00025a007099 , Zm00025a007614
Brachypodium PNT68810
Barley HORVU6Hr1G027570.7 , HORVU6Hr1G027570.6 , HORVU6Hr1G027570.5 , HORVU6Hr1G027570.3 , HORVU6Hr1G027570.2 , HORVU6Hr1G027570.1 , HORVU6Hr1G027570.9 , HORVU6Hr1G027570.8 , HORVU6Hr1G027570.15 , HORVU6Hr1G027570.14 , HORVU6Hr1G027570.13 , HORVU6Hr1G027570.12 , HORVU6Hr1G027570.11 , HORVU6Hr1G027570.10 , HORVU7Hr1G105370.9 , HORVU7Hr1G105370.8 , HORVU7Hr1G105370.3 , HORVU7Hr1G105370.2 , HORVU7Hr1G105370.1 , HORVU7Hr1G105370.7 , HORVU7Hr1G105370.6 , HORVU7Hr1G105370.5 , HORVU7Hr1G105370.4 , HORVU7Hr1G105370.13 , HORVU7Hr1G105370.12 , HORVU7Hr1G105370.11 , HORVU7Hr1G105370.10 , HORVU7Hr1G105370.16 , HORVU7Hr1G105370.15 , HORVU7Hr1G105370.14
Wheat TraesCS6B02G169200 , TraesCS6B02G169200 , TraesCS6B02G169200 , TraesCS7A02G457300 , TraesCS7A02G457300 , TraesCS6A02G141100 , TraesCS7D02G445900 , TraesCS6A02G141100 , TraesCS7D02G445900 , TraesCS6A02G141100 , TraesCS7D02G445900 , TraesCS7B02G358800 , TraesCS7B02G358800 , TraesCS7B02G358800 , TraesCS7B02G358800 , TraesCS6D02G130400 , TraesCS6D02G130400 , TraesCS6D02G130400
Populus -


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cDNA sequences
Sobic.004G173100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
3 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
4 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
5 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
6 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
10 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
11 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
12 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
13 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
14 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
15 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
16 Sobic.002G356600 ZCW7, putative, expressed -
17 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
18 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
19 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
20 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12


Gene co-expression network
sample Sobic004G173100 Sobic004G173100 Sobic009G071700 Sobic009G071700 Sobic004G173100--Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic004G173100--Sobic006G251600 Sobic003G425100 Sobic003G425100 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic006G198600 Sobic006G198600 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic008G163500 Sobic008G163500 Sobic004G173100--Sobic008G163500 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic010G224700 Sobic010G224700 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic002G399200--Sobic002G262100 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700
Octagon: transcription factors


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