Gene annotation
Transcriptome id Sobic.002G399200.1
Synonym Sb02g041390
Functional annotation -
UniProt C5X431
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF336
NCBI CDD KOG0344; ATP-dependent RNA helicase
KEGG Orthology K14779; DDX52, ATP-dependent RNA helicase DDX52/ROK1
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G09720 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g45360.1 : DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048983
Brachypodium PNT74648 , KQK14918 , KQK14919
Barley HORVU5Hr1G076170.7
Wheat TraesCS2D02G141000 , TraesCS2A02G138000 , TraesCS2B02G161900
Populus -


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cDNA sequences
Sobic.002G399200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
2 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
3 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
4 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
5 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
6 Sobic.002G177500 expressed protein -
7 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
8 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
9 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
10 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
11 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
12 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
13 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
14 Sobic.007G145100 SGT1 protein, putative, expressed -
15 Sobic.002G112600 zinc finger family protein, putative, expressed -
16 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
18 Sobic.010G224700 - K17680: twinkle protein
19 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
20 Sobic.004G211100 RNA binding protein, putative, expressed K11090: LA, lupus La protein


Gene co-expression network
sample Sobic002G399200 Sobic002G399200 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic002G262100--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic008G163500--Sobic005G028100 Sobic003G123200 Sobic003G123200 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic010G224700 Sobic010G224700 Sobic008G163500--Sobic010G224700 Sobic004G036700 Sobic004G036700 Sobic008G163500--Sobic004G036700 Sobic009G235200--Sobic008G163500 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700 Sobic009G071700 Sobic009G071700 Sobic004G173100--Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic001G370300 Sobic001G370300 Sobic002G177500--Sobic001G370300 Sobic004G285000 Sobic004G285000 Sobic002G177500--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G177500--Sobic001G168100 Sobic002G177500--Sobic003G436600 Sobic001G013300 Sobic001G013300 Sobic002G177500--Sobic001G013300 Sobic002G223300 Sobic002G223300 Sobic002G177500--Sobic002G223300 Sobic002G177500--Sobic002G399200 Sobic002G177500--Sobic006G226300 Sobic009G151200 Sobic009G151200 Sobic002G177500--Sobic009G151200 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic009G163600--Sobic003G425100 Sobic009G163600--Sobic003G436600 Sobic002G112600 Sobic002G112600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic006G140400 Sobic006G140400 Sobic009G163600--Sobic006G140400 Sobic004G011000 Sobic004G011000 Sobic009G040500--Sobic004G011000 Sobic009G040500--Sobic001G370300 Sobic009G211700 Sobic009G211700 Sobic009G040500--Sobic009G211700 Sobic009G040500--Sobic002G177500 Sobic009G040500--Sobic002G399200 Sobic010G073200 Sobic010G073200 Sobic009G040500--Sobic010G073200 Sobic009G040500--Sobic003G407600 Sobic008G009600 Sobic008G009600 Sobic009G040500--Sobic008G009600 Sobic003G198300 Sobic003G198300 Sobic009G040500--Sobic003G198300
Octagon: transcription factors


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