Gene annotation
Transcriptome id Sobic.009G040500.1
Synonym
Functional annotation glioma tumor suppressor candidate region gene 2 protein, putative, expressed
UniProt A0A1B6P6H2
Pfam PF07767
Panther DB PTHR14211
NCBI CDD KOG2823; Cellular protein (glioma tumor suppressor candidate region gene 2)
KEGG Orthology K14840; NOP53, nucleolar protein 53
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40430 : -
RAP-DB (Rice) LOC_Os05g05220.1 : glioma tumor suppressor candidate region gene 2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a055381
Brachypodium KQK07592
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G040500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
2 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
3 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.002G177500 expressed protein -
5 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
6 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
9 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
10 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
11 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
12 Sobic.003G115100 importin subunit alpha, putative, expressed -
13 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
14 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
15 Sobic.003G118400 expressed protein -
16 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
17 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
18 Sobic.001G507900 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
19 Sobic.001G168100 OsFBD13 - F-box and FBD domain containing protein, expressed -
20 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase


Gene co-expression network
sample Sobic009G040500 Sobic009G040500 Sobic004G011000 Sobic004G011000 Sobic009G040500--Sobic004G011000 Sobic001G370300 Sobic001G370300 Sobic009G040500--Sobic001G370300 Sobic009G211700 Sobic009G211700 Sobic009G040500--Sobic009G211700 Sobic002G177500 Sobic002G177500 Sobic009G040500--Sobic002G177500 Sobic002G399200 Sobic002G399200 Sobic009G040500--Sobic002G399200 Sobic010G073200 Sobic010G073200 Sobic009G040500--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic009G040500--Sobic003G407600 Sobic008G009600 Sobic008G009600 Sobic009G040500--Sobic008G009600 Sobic003G198300 Sobic003G198300 Sobic009G040500--Sobic003G198300 Sobic004G011000--Sobic008G009600 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic003G160900 Sobic003G160900 Sobic009G211700--Sobic003G160900 Sobic001G091900 Sobic001G091900 Sobic009G211700--Sobic001G091900 Sobic001G371100 Sobic001G371100 Sobic009G211700--Sobic001G371100 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic002G177500--Sobic001G370300 Sobic004G285000 Sobic004G285000 Sobic002G177500--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G177500--Sobic001G168100 Sobic003G436600 Sobic003G436600 Sobic002G177500--Sobic003G436600 Sobic001G013300 Sobic001G013300 Sobic002G177500--Sobic001G013300 Sobic002G223300 Sobic002G223300 Sobic002G177500--Sobic002G223300 Sobic002G177500--Sobic002G399200 Sobic006G226300 Sobic006G226300 Sobic002G177500--Sobic006G226300 Sobic009G151200 Sobic009G151200 Sobic002G177500--Sobic009G151200 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G399200--Sobic002G177500 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic002G399200--Sobic009G040500 Sobic010G073200--Sobic008G009600 Sobic003G258900 Sobic003G258900 Sobic010G073200--Sobic003G258900 Sobic001G126600 Sobic001G126600 Sobic010G073200--Sobic001G126600 Sobic010G073200--Sobic009G046700 Sobic001G177100 Sobic001G177100 Sobic010G073200--Sobic001G177100 Sobic010G073200--Sobic009G040500 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic010G073200--Sobic006G226300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic003G407600--Sobic008G009600 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic003G407600--Sobic001G230200 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic008G009600--Sobic010G073200 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic008G009600--Sobic006G226300 Sobic009G258500 Sobic009G258500 Sobic003G198300--Sobic009G258500 Sobic009G102900 Sobic009G102900 Sobic003G198300--Sobic009G102900 Sobic003G198300--Sobic009G211700 Sobic004G249300 Sobic004G249300 Sobic003G198300--Sobic004G249300 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic009G201800 Sobic009G201800 Sobic003G198300--Sobic009G201800 Sobic006G251600 Sobic006G251600 Sobic003G198300--Sobic006G251600 Sobic004G307500 Sobic004G307500 Sobic003G198300--Sobic004G307500
Octagon: transcription factors


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