Gene annotation
Transcriptome id Sobic.009G211700.1
Synonym HDA3, HDT1, HD2A, Sb09g026730, ATHD2A
Functional annotation ZOS5-12 - C2H2 zinc finger protein, expressed
UniProt C5YUI2
Pfam -
Panther DB PTHR31802 PTHR31802:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44750 : histone deacetylase 3
RAP-DB (Rice) LOC_Os05g51830.1 : ZOS5-12 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a044360 , Zm00025a038323
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G211700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
3 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
4 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
5 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
6 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
7 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
8 Sobic.006G098500 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
10 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
11 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
12 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
13 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
14 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
15 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
16 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
17 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
18 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
19 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
20 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase


Gene co-expression network
sample Sobic009G211700 Sobic009G211700 Sobic003G160900 Sobic003G160900 Sobic009G211700--Sobic003G160900 Sobic001G091900 Sobic001G091900 Sobic009G211700--Sobic001G091900 Sobic001G371100 Sobic001G371100 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic003G198300 Sobic003G198300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic001G481700 Sobic001G481700 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic003G160900--Sobic009G211700 Sobic003G160900--Sobic001G091900 Sobic001G091900--Sobic004G326600 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G091900--Sobic001G481700 Sobic001G091900--Sobic009G211700 Sobic002G341800 Sobic002G341800 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic001G091900--Sobic001G458700 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic004G011000 Sobic004G011000 Sobic009G040500--Sobic004G011000 Sobic001G370300 Sobic001G370300 Sobic009G040500--Sobic001G370300 Sobic009G040500--Sobic009G211700 Sobic002G177500 Sobic002G177500 Sobic009G040500--Sobic002G177500 Sobic002G399200 Sobic002G399200 Sobic009G040500--Sobic002G399200 Sobic010G073200 Sobic010G073200 Sobic009G040500--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic009G040500--Sobic003G407600 Sobic008G009600 Sobic008G009600 Sobic009G040500--Sobic008G009600 Sobic009G040500--Sobic003G198300 Sobic003G196800 Sobic003G196800 Sobic005G027300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic001G342200 Sobic001G342200 Sobic005G027300--Sobic001G342200 Sobic001G025600 Sobic001G025600 Sobic005G027300--Sobic001G025600 Sobic005G027300--Sobic001G481700 Sobic001G513500 Sobic001G513500 Sobic005G027300--Sobic001G513500 Sobic009G258500 Sobic009G258500 Sobic003G198300--Sobic009G258500 Sobic009G102900 Sobic009G102900 Sobic003G198300--Sobic009G102900 Sobic003G198300--Sobic009G211700 Sobic004G249300 Sobic004G249300 Sobic003G198300--Sobic004G249300 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic009G201800 Sobic009G201800 Sobic003G198300--Sobic009G201800 Sobic003G198300--Sobic006G251600 Sobic004G307500 Sobic004G307500 Sobic003G198300--Sobic004G307500 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic004G326600--Sobic002G143000 Sobic004G326600--Sobic001G458700 Sobic006G098500--Sobic009G211700 Sobic010G251100 Sobic010G251100 Sobic006G098500--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic006G098500--Sobic001G402300 Sobic006G098500--Sobic006G056600 Sobic006G098500--Sobic001G091900 Sobic003G043100 Sobic003G043100 Sobic006G098500--Sobic003G043100 Sobic006G098500--Sobic003G160900 Sobic006G098500--Sobic002G341800 Sobic001G083200 Sobic001G083200 Sobic006G098500--Sobic001G083200 Sobic001G230200--Sobic003G407600 Sobic001G230200--Sobic009G211700 Sobic010G247400 Sobic010G247400 Sobic001G230200--Sobic010G247400 Sobic001G230200--Sobic006G056600 Sobic001G230200--Sobic003G196800 Sobic003G407800 Sobic003G407800 Sobic001G230200--Sobic003G407800 Sobic001G230200--Sobic001G091900 Sobic001G401400 Sobic001G401400 Sobic001G230200--Sobic001G401400 Sobic001G230200--Sobic005G027300
Octagon: transcription factors


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