Gene annotation
Transcriptome id Sobic.006G098500.1
Synonym ATRBP47C\', RBP47C\', Sb06g018280
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Y9C4
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF488
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G47500 : RNA-binding protein 47C\'
RAP-DB (Rice) LOC_Os04g37690.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056169 , Zm00025a031694 , Zm00025a020769
Brachypodium KQJ82883 , KQJ99982 , KQJ90544
Barley HORVU5Hr1G069180.9 , HORVU5Hr1G069180.5 , HORVU6Hr1G048390.1 , HORVU6Hr1G048390.2 , HORVU6Hr1G048390.3 , HORVU6Hr1G048390.4 , HORVU6Hr1G048390.5 , HORVU6Hr1G048390.6 , HORVU5Hr1G069180.11 , HORVU2Hr1G106810.8 , HORVU2Hr1G106810.2 , HORVU2Hr1G106810.3 , HORVU2Hr1G106810.1 , HORVU2Hr1G106810.6 , HORVU2Hr1G106810.7 , HORVU2Hr1G106810.4 , HORVU2Hr1G106810.5 , HORVU5Hr1G069180.3 , HORVU5Hr1G069180.2 , HORVU5Hr1G069180.1 , HORVU5Hr1G069180.6 , HORVU2Hr1G078910.10 , HORVU2Hr1G078910.9 , HORVU2Hr1G078910.8 , HORVU2Hr1G078910.5 , HORVU2Hr1G078910.4 , HORVU2Hr1G078910.7 , HORVU2Hr1G078910.6 , HORVU2Hr1G078910.3 , HORVU2Hr1G078910.2
Wheat TraesCS5B02G241400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS6A02G204400 , TraesCS2D02G472700 , TraesCS6B02G228100 , TraesCS6B02G228100 , TraesCS6B02G228100 , TraesCS2D02G472700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2A02G473000 , TraesCS2B02G495700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS5D02G250100 , TraesCS5A02G243500 , TraesCS6D02G184600 , TraesCS6D02G184600 , TraesCS6D02G184600
Populus -


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cDNA sequences
Sobic.006G098500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
2 Sobic.010G251100 - K03257: translation initiation factor 4A
3 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
4 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
5 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
6 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
7 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
8 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
9 Sobic.001G083200 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
K02180: cell cycle arrest protein BUB3
10 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
11 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
12 Sobic.008G132800 expressed protein -
13 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
14 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
15 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
16 Sobic.002G243500 similar to Heat shock protein 81-2(PubMedID : 29862293)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
17 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
18 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
19 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
20 Sobic.006G242300 - -


Gene co-expression network
sample Sobic006G098500 Sobic006G098500 Sobic009G211700 Sobic009G211700 Sobic006G098500--Sobic009G211700 Sobic010G251100 Sobic010G251100 Sobic006G098500--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic006G098500--Sobic001G402300 Sobic006G056600 Sobic006G056600 Sobic006G098500--Sobic006G056600 Sobic001G091900 Sobic001G091900 Sobic006G098500--Sobic001G091900 Sobic003G043100 Sobic003G043100 Sobic006G098500--Sobic003G043100 Sobic003G160900 Sobic003G160900 Sobic006G098500--Sobic003G160900 Sobic002G341800 Sobic002G341800 Sobic006G098500--Sobic002G341800 Sobic001G083200 Sobic001G083200 Sobic006G098500--Sobic001G083200 Sobic009G211700--Sobic003G160900 Sobic009G211700--Sobic001G091900 Sobic001G371100 Sobic001G371100 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic003G198300 Sobic003G198300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic006G056600--Sobic001G091900 Sobic006G056600--Sobic002G341800 Sobic002G014400 Sobic002G014400 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic001G091900--Sobic004G326600 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic001G091900--Sobic006G056600 Sobic001G481700 Sobic001G481700 Sobic001G091900--Sobic001G481700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic001G091900--Sobic001G458700 Sobic001G428400 Sobic001G428400 Sobic003G043100--Sobic001G428400 Sobic009G178600 Sobic009G178600 Sobic003G043100--Sobic009G178600 Sobic003G043100--Sobic006G242300 Sobic004G077000 Sobic004G077000 Sobic003G043100--Sobic004G077000 Sobic001G429400 Sobic001G429400 Sobic003G043100--Sobic001G429400 Sobic001G083600 Sobic001G083600 Sobic003G043100--Sobic001G083600 Sobic003G043100--Sobic004G072800 Sobic004G006300 Sobic004G006300 Sobic003G043100--Sobic004G006300 Sobic001G390500 Sobic001G390500 Sobic003G043100--Sobic001G390500 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic003G160900--Sobic009G211700 Sobic003G160900--Sobic001G091900 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G083200--Sobic001G529000 Sobic002G373800 Sobic002G373800 Sobic001G083200--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic001G083200--Sobic009G036900 Sobic010G042800 Sobic010G042800 Sobic001G083200--Sobic010G042800 Sobic007G163700 Sobic007G163700 Sobic001G083200--Sobic007G163700 Sobic001G040300 Sobic001G040300 Sobic001G083200--Sobic001G040300 Sobic010G039800 Sobic010G039800 Sobic001G083200--Sobic010G039800 Sobic008G132800 Sobic008G132800 Sobic001G083200--Sobic008G132800 Sobic002G263800 Sobic002G263800 Sobic001G083200--Sobic002G263800
Octagon: transcription factors


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