Gene annotation
Transcriptome id Sobic.001G083200.1
Synonym ELF5A-1, ATELF5A-1, EIF-5A, EIF5A, Sb01g007500
Functional annotation eukaryotic translation initiation factor 5A, putative, expressed
UniProt A0A1B6QHV2
Pfam PF01287
Panther DB PTHR11673 PTHR11673:SF8
NCBI CDD KOG3271; Translation initiation factor 5A (eIF-5A)
KEGG Orthology K03263; translation initiation factor 5A K02180cell cycle arrest protein BUB3
Gene Ontology GO:0006452; translational frameshifting GO:0003746translation elongation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G13950 : eukaryotic elongation factor 5A-1
RAP-DB (Rice) LOC_Os03g55150.4 : eukaryotic translation initiation factor 5A, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK21172
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G083200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
2 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
3 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
4 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
5 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
6 Sobic.001G040300 expressed protein -
7 Sobic.010G039800 expressed protein -
8 Sobic.008G132800 expressed protein -
9 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
10 Sobic.001G439700 actin-depolymerizing factor, putative, expressed K05765: cofilin
11 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
12 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
13 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
14 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
15 Sobic.007G095400 expressed protein -
16 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
17 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
18 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
20 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1


Gene co-expression network
sample Sobic001G083200 Sobic001G083200 Sobic001G529000 Sobic001G529000 Sobic001G083200--Sobic001G529000 Sobic002G373800 Sobic002G373800 Sobic001G083200--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic001G083200--Sobic009G036900 Sobic010G042800 Sobic010G042800 Sobic001G083200--Sobic010G042800 Sobic007G163700 Sobic007G163700 Sobic001G083200--Sobic007G163700 Sobic001G040300 Sobic001G040300 Sobic001G083200--Sobic001G040300 Sobic010G039800 Sobic010G039800 Sobic001G083200--Sobic010G039800 Sobic008G132800 Sobic008G132800 Sobic001G083200--Sobic008G132800 Sobic002G263800 Sobic002G263800 Sobic001G083200--Sobic002G263800 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic001G529000--Sobic007G163700 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic001G517600 Sobic001G517600 Sobic002G373800--Sobic001G517600 Sobic010G173100 Sobic010G173100 Sobic002G373800--Sobic010G173100 Sobic002G406500 Sobic002G406500 Sobic002G373800--Sobic002G406500 Sobic002G373800--Sobic002G263800 Sobic003G280700 Sobic003G280700 Sobic002G373800--Sobic003G280700 Sobic001G436200 Sobic001G436200 Sobic002G373800--Sobic001G436200 Sobic005G111100 Sobic005G111100 Sobic002G373800--Sobic005G111100 Sobic001G011200 Sobic001G011200 Sobic002G373800--Sobic001G011200 Sobic002G374900 Sobic002G374900 Sobic002G373800--Sobic002G374900 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic010G228600 Sobic010G228600 Sobic009G036900--Sobic010G228600 Sobic009G036900--Sobic010G039800 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic004G310900 Sobic004G310900 Sobic010G042800--Sobic004G310900 Sobic010G042800--Sobic002G263800 Sobic010G042800--Sobic005G157200 Sobic010G042800--Sobic002G406500 Sobic004G066800 Sobic004G066800 Sobic010G042800--Sobic004G066800 Sobic004G032000 Sobic004G032000 Sobic010G042800--Sobic004G032000 Sobic010G042800--Sobic001G331900 Sobic003G129800 Sobic003G129800 Sobic010G042800--Sobic003G129800 Sobic001G128400 Sobic001G128400 Sobic010G042800--Sobic001G128400 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic007G163700--Sobic001G517600 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic007G163700--Sobic001G529000 Sobic007G163700--Sobic001G128400 Sobic007G163700--Sobic003G362400 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic001G040300--Sobic007G163700 Sobic001G040300--Sobic001G083200 Sobic001G040300--Sobic003G024800 Sobic008G138600 Sobic008G138600 Sobic001G040300--Sobic008G138600 Sobic006G143500 Sobic006G143500 Sobic001G040300--Sobic006G143500 Sobic001G230900 Sobic001G230900 Sobic001G040300--Sobic001G230900 Sobic001G040300--Sobic001G517600 Sobic001G040300--Sobic004G032000 Sobic002G353500 Sobic002G353500 Sobic001G040300--Sobic002G353500 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic008G161800 Sobic008G161800 Sobic010G039800--Sobic008G161800 Sobic009G016201 Sobic009G016201 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic010G039800--Sobic002G373800 Sobic010G039800--Sobic009G036900 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic002G078400 Sobic002G078400 Sobic008G132800--Sobic002G078400 Sobic008G132800--Sobic009G016201 Sobic008G132800--Sobic001G331900 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic002G263800--Sobic008G161800 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic002G263800--Sobic010G173100 Sobic002G263800--Sobic010G039800 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300
Octagon: transcription factors


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