Gene annotation
Transcriptome id Sobic.001G040300.1
Synonym Sb01g003720
Functional annotation expressed protein
UniProt C5WVZ0
Pfam PF14360
Panther DB PTHR21290 PTHR21290:SF32
NCBI CDD KOG3058; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43580 : Sphingomyelin synthetase family protein
RAP-DB (Rice) LOC_Os04g34620.1 : expressed protein
MaizeGDB (Corn) Zm00025a008742
Brachypodium KQJ82615
Barley HORVU2Hr1G074700.3 , HORVU2Hr1G074700.4 , HORVU2Hr1G074700.5 , HORVU2Hr1G074700.6 , HORVU2Hr1G074700.1 , HORVU2Hr1G074700.2
Wheat TraesCS2A02G301100 , TraesCS2D02G299800
Populus -


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cDNA sequences
Sobic.001G040300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
2 Sobic.001G083200 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
K02180: cell cycle arrest protein BUB3
3 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
4 Sobic.008G138600 SCARECROW, putative, expressed -
5 Sobic.006G143500 expressed protein -
6 Sobic.001G230900 - K07910: Ras-related protein Rab-18
7 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
8 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
9 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
10 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
11 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
12 Sobic.005G211200 seed maturation protein PM27, putative, expressed -
13 Sobic.001G285300 expressed protein -
14 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
15 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
16 Sobic.008G132800 expressed protein -
17 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
18 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
19 Sobic.010G267900 expressed protein -
20 Sobic.009G117000 expressed protein -


Gene co-expression network
sample Sobic001G040300 Sobic001G040300 Sobic007G163700 Sobic007G163700 Sobic001G040300--Sobic007G163700 Sobic001G083200 Sobic001G083200 Sobic001G040300--Sobic001G083200 Sobic003G024800 Sobic003G024800 Sobic001G040300--Sobic003G024800 Sobic008G138600 Sobic008G138600 Sobic001G040300--Sobic008G138600 Sobic006G143500 Sobic006G143500 Sobic001G040300--Sobic006G143500 Sobic001G230900 Sobic001G230900 Sobic001G040300--Sobic001G230900 Sobic001G517600 Sobic001G517600 Sobic001G040300--Sobic001G517600 Sobic004G032000 Sobic004G032000 Sobic001G040300--Sobic004G032000 Sobic002G353500 Sobic002G353500 Sobic001G040300--Sobic002G353500 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic001G128400 Sobic001G128400 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic001G083200--Sobic001G529000 Sobic001G083200--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic001G083200--Sobic009G036900 Sobic010G042800 Sobic010G042800 Sobic001G083200--Sobic010G042800 Sobic001G083200--Sobic007G163700 Sobic001G083200--Sobic001G040300 Sobic010G039800 Sobic010G039800 Sobic001G083200--Sobic010G039800 Sobic008G132800 Sobic008G132800 Sobic001G083200--Sobic008G132800 Sobic002G263800 Sobic002G263800 Sobic001G083200--Sobic002G263800 Sobic003G024800--Sobic009G036900 Sobic004G349100 Sobic004G349100 Sobic003G024800--Sobic004G349100 Sobic001G309100 Sobic001G309100 Sobic003G024800--Sobic001G309100 Sobic009G034400 Sobic009G034400 Sobic003G024800--Sobic009G034400 Sobic001G350501 Sobic001G350501 Sobic003G024800--Sobic001G350501 Sobic007G063200 Sobic007G063200 Sobic003G024800--Sobic007G063200 Sobic010G071200 Sobic010G071200 Sobic003G024800--Sobic010G071200 Sobic008G142700 Sobic008G142700 Sobic003G024800--Sobic008G142700 Sobic010G228600 Sobic010G228600 Sobic003G024800--Sobic010G228600 Sobic008G138600--Sobic008G132800 Sobic005G111100 Sobic005G111100 Sobic008G138600--Sobic005G111100 Sobic008G138600--Sobic004G032000 Sobic001G294000 Sobic001G294000 Sobic008G138600--Sobic001G294000 Sobic008G138600--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G138600--Sobic010G065400 Sobic006G150600 Sobic006G150600 Sobic008G138600--Sobic006G150600 Sobic010G054200 Sobic010G054200 Sobic008G138600--Sobic010G054200 Sobic008G138600--Sobic001G040300 Sobic006G143500--Sobic004G032000 Sobic001G285300 Sobic001G285300 Sobic006G143500--Sobic001G285300 Sobic002G044000 Sobic002G044000 Sobic006G143500--Sobic002G044000 Sobic006G143500--Sobic001G517600 Sobic001G402300 Sobic001G402300 Sobic006G143500--Sobic001G402300 Sobic001G532100 Sobic001G532100 Sobic006G143500--Sobic001G532100 Sobic003G358300 Sobic003G358300 Sobic006G143500--Sobic003G358300 Sobic001G126200 Sobic001G126200 Sobic006G143500--Sobic001G126200 Sobic001G402600 Sobic001G402600 Sobic006G143500--Sobic001G402600 Sobic010G238700 Sobic010G238700 Sobic001G230900--Sobic010G238700 Sobic001G230900--Sobic009G036900 Sobic010G144400 Sobic010G144400 Sobic001G230900--Sobic010G144400 Sobic002G068300 Sobic002G068300 Sobic001G230900--Sobic002G068300 Sobic001G230900--Sobic003G024800 Sobic001G230900--Sobic008G132800 Sobic001G230900--Sobic010G228600 Sobic001G090000 Sobic001G090000 Sobic001G230900--Sobic001G090000 Sobic001G230900--Sobic001G040300 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic004G032000--Sobic001G517600 Sobic003G129800 Sobic003G129800 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic009G191200 Sobic009G191200 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic004G032000--Sobic003G109600 Sobic004G032000--Sobic005G050500 Sobic001G107300 Sobic001G107300 Sobic002G353500--Sobic001G107300 Sobic002G353500--Sobic001G040300 Sobic001G081400 Sobic001G081400 Sobic002G353500--Sobic001G081400 Sobic007G022500 Sobic007G022500 Sobic002G353500--Sobic007G022500 Sobic006G108600 Sobic006G108600 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic004G343600 Sobic004G343600 Sobic002G353500--Sobic004G343600 Sobic009G052500 Sobic009G052500 Sobic002G353500--Sobic009G052500
Octagon: transcription factors


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