Gene annotation
Transcriptome id Sobic.002G353500.1
Synonym Sb02g037530
Functional annotation ruvB-like 2, putative, expressed
UniProt C5XCF8
Pfam PF06068
Panther DB PTHR11093 PTHR11093:SF2
NCBI CDD -
KEGG Orthology K11338; RUVBL2, RVB2, RuvB-like protein 2
Gene Ontology GO:0005524; ATP binding GO:0003678DNA helicase activity


Orthologs (automatic annotation)
TAIR AT5G67630 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g08770.1 : ruvB-like 2, putative, expressed
MaizeGDB (Corn) Zm00025a048512 , Zm00025a015001
Brachypodium KQK15529
Barley HORVU2Hr1G036750.1 , HORVU2Hr1G036750.2
Wheat TraesCS2D02G199500 , TraesCS2A02G188100 , TraesCS2B02G219100
Populus -


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cDNA sequences
Sobic.002G353500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
2 Sobic.001G040300 expressed protein -
3 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
4 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
5 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
6 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
7 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
8 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
9 Sobic.009G052500 RNA polymerase Rpb7, N-terminal domain containing protein, expressed K16253: NRPD7, DNA-directed RNA polymerase IV and V subunit 7
10 Sobic.003G310600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed -
11 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
12 Sobic.009G233700 CobW/P47K family protein, putative, expressed K03189: urease accessory protein
13 Sobic.004G284900 expressed protein K03019: RPC11, DNA-directed RNA polymerase III subunit RPC11
14 Sobic.001G233800 expressed protein -
15 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
16 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
17 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
18 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
19 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
20 Sobic.002G254650 - -


Gene co-expression network
sample Sobic002G353500 Sobic002G353500 Sobic001G107300 Sobic001G107300 Sobic002G353500--Sobic001G107300 Sobic001G040300 Sobic001G040300 Sobic002G353500--Sobic001G040300 Sobic001G081400 Sobic001G081400 Sobic002G353500--Sobic001G081400 Sobic007G022500 Sobic007G022500 Sobic002G353500--Sobic007G022500 Sobic006G108600 Sobic006G108600 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic004G343600 Sobic004G343600 Sobic002G353500--Sobic004G343600 Sobic009G052500 Sobic009G052500 Sobic002G353500--Sobic009G052500 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic007G163700 Sobic007G163700 Sobic001G040300--Sobic007G163700 Sobic001G083200 Sobic001G083200 Sobic001G040300--Sobic001G083200 Sobic003G024800 Sobic003G024800 Sobic001G040300--Sobic003G024800 Sobic008G138600 Sobic008G138600 Sobic001G040300--Sobic008G138600 Sobic006G143500 Sobic006G143500 Sobic001G040300--Sobic006G143500 Sobic001G230900 Sobic001G230900 Sobic001G040300--Sobic001G230900 Sobic001G517600 Sobic001G517600 Sobic001G040300--Sobic001G517600 Sobic004G032000 Sobic004G032000 Sobic001G040300--Sobic004G032000 Sobic001G040300--Sobic002G353500 Sobic007G034400 Sobic007G034400 Sobic001G081400--Sobic007G034400 Sobic003G310600 Sobic003G310600 Sobic001G081400--Sobic003G310600 Sobic001G081400--Sobic002G353500 Sobic008G094600 Sobic008G094600 Sobic001G081400--Sobic008G094600 Sobic001G069400 Sobic001G069400 Sobic001G081400--Sobic001G069400 Sobic001G202400 Sobic001G202400 Sobic001G081400--Sobic001G202400 Sobic003G244300 Sobic003G244300 Sobic001G081400--Sobic003G244300 Sobic003G015400 Sobic003G015400 Sobic001G081400--Sobic003G015400 Sobic008G103900 Sobic008G103900 Sobic001G081400--Sobic008G103900 Sobic007G022500--Sobic008G094600 Sobic007G022500--Sobic004G032000 Sobic007G022500--Sobic001G517600 Sobic009G191200 Sobic009G191200 Sobic007G022500--Sobic009G191200 Sobic008G098800 Sobic008G098800 Sobic007G022500--Sobic008G098800 Sobic002G044000 Sobic002G044000 Sobic007G022500--Sobic002G044000 Sobic007G022500--Sobic006G108600 Sobic004G137900 Sobic004G137900 Sobic007G022500--Sobic004G137900 Sobic003G358300 Sobic003G358300 Sobic007G022500--Sobic003G358300 Sobic007G029400 Sobic007G029400 Sobic006G108600--Sobic007G029400 Sobic010G054200 Sobic010G054200 Sobic006G108600--Sobic010G054200 Sobic008G135000 Sobic008G135000 Sobic006G108600--Sobic008G135000 Sobic010G005300 Sobic010G005300 Sobic006G108600--Sobic010G005300 Sobic010G076400 Sobic010G076400 Sobic006G108600--Sobic010G076400 Sobic006G108600--Sobic008G094600 Sobic006G108600--Sobic001G162800 Sobic009G233400 Sobic009G233400 Sobic006G108600--Sobic009G233400 Sobic006G108600--Sobic004G032000 Sobic008G111700 Sobic008G111700 Sobic001G349400--Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic001G349400--Sobic001G285300 Sobic003G434000 Sobic003G434000 Sobic001G349400--Sobic003G434000 Sobic002G051200 Sobic002G051200 Sobic001G349400--Sobic002G051200 Sobic001G349400--Sobic003G024800 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic003G420700 Sobic003G420700 Sobic001G349400--Sobic003G420700 Sobic004G242100 Sobic004G242100 Sobic001G544100--Sobic004G242100 Sobic001G544100--Sobic004G137900 Sobic001G532100 Sobic001G532100 Sobic001G544100--Sobic001G532100 Sobic002G279000 Sobic002G279000 Sobic001G544100--Sobic002G279000 Sobic004G260400 Sobic004G260400 Sobic001G544100--Sobic004G260400 Sobic001G094500 Sobic001G094500 Sobic001G544100--Sobic001G094500 Sobic004G012800 Sobic004G012800 Sobic001G544100--Sobic004G012800 Sobic006G276200 Sobic006G276200 Sobic001G544100--Sobic006G276200 Sobic001G009800 Sobic001G009800 Sobic001G544100--Sobic001G009800 Sobic004G343600--Sobic001G107300 Sobic002G386300 Sobic002G386300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic002G184900 Sobic002G184900 Sobic004G343600--Sobic002G184900 Sobic006G231700 Sobic006G231700 Sobic009G052500--Sobic006G231700 Sobic009G052500--Sobic001G094500 Sobic009G052500--Sobic002G051200 Sobic009G052500--Sobic003G434000 Sobic009G052500--Sobic006G013900 Sobic001G389400 Sobic001G389400 Sobic009G052500--Sobic001G389400 Sobic009G052500--Sobic007G022500 Sobic001G034600 Sobic001G034600 Sobic009G052500--Sobic001G034600 Sobic004G265700 Sobic004G265700 Sobic009G052500--Sobic004G265700
Octagon: transcription factors


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