Gene annotation
Transcriptome id Sobic.004G284900.1
Synonym Sb04g032090
Functional annotation expressed protein
UniProt A0A194YS54
Pfam PF01096
Panther DB PTHR11239 PTHR11239:SF12
NCBI CDD KOG2906; RNA polymerase III subunit C11
KEGG Orthology K03019; RPC11, DNA-directed RNA polymerase III subunit RPC11
Gene Ontology GO:0008270; zinc ion binding GO:0006351transcription, DNA-templated GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G07950 : DNA-directed RNA polymerase, subunit M, archaeal
RAP-DB (Rice) LOC_Os02g45120.2 : expressed protein
MaizeGDB (Corn) Zm00025a032277
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G284900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
2 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
3 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
4 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
5 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
6 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
7 Sobic.009G231900 expressed protein -
8 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
9 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
10 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
11 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
12 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
13 Sobic.001G040300 expressed protein -
14 Sobic.005G211200 seed maturation protein PM27, putative, expressed -
15 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
16 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
17 Sobic.001G233800 expressed protein -
18 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
19 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
20 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G284900 Sobic004G284900 Sobic001G041200 Sobic001G041200 Sobic004G284900--Sobic001G041200 Sobic001G107300 Sobic001G107300 Sobic004G284900--Sobic001G107300 Sobic003G442400 Sobic003G442400 Sobic004G284900--Sobic003G442400 Sobic002G380000 Sobic002G380000 Sobic004G284900--Sobic002G380000 Sobic002G353500 Sobic002G353500 Sobic004G284900--Sobic002G353500 Sobic002G402500 Sobic002G402500 Sobic004G284900--Sobic002G402500 Sobic009G231900 Sobic009G231900 Sobic004G284900--Sobic009G231900 Sobic002G045100 Sobic002G045100 Sobic004G284900--Sobic002G045100 Sobic006G272200 Sobic006G272200 Sobic004G284900--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic001G041200--Sobic006G242300 Sobic003G119400 Sobic003G119400 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G067900 Sobic001G067900 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic006G056600 Sobic006G056600 Sobic001G041200--Sobic006G056600 Sobic009G033900 Sobic009G033900 Sobic001G041200--Sobic009G033900 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic004G047500 Sobic004G047500 Sobic001G107300--Sobic004G047500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic001G025600 Sobic001G025600 Sobic003G442400--Sobic001G025600 Sobic006G052400 Sobic006G052400 Sobic003G442400--Sobic006G052400 Sobic004G103700 Sobic004G103700 Sobic003G442400--Sobic004G103700 Sobic008G058300 Sobic008G058300 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G287300 Sobic003G287300 Sobic003G442400--Sobic003G287300 Sobic003G362400 Sobic003G362400 Sobic003G442400--Sobic003G362400 Sobic003G018600 Sobic003G018600 Sobic003G442400--Sobic003G018600 Sobic006G115000 Sobic006G115000 Sobic003G442400--Sobic006G115000 Sobic005G157200 Sobic005G157200 Sobic002G380000--Sobic005G157200 Sobic002G380000--Sobic008G058300 Sobic010G029400 Sobic010G029400 Sobic002G380000--Sobic010G029400 Sobic002G022400 Sobic002G022400 Sobic002G380000--Sobic002G022400 Sobic002G007100 Sobic002G007100 Sobic002G380000--Sobic002G007100 Sobic004G152400 Sobic004G152400 Sobic002G380000--Sobic004G152400 Sobic004G002350 Sobic004G002350 Sobic002G380000--Sobic004G002350 Sobic002G380000--Sobic006G052400 Sobic003G025200 Sobic003G025200 Sobic002G380000--Sobic003G025200 Sobic002G353500--Sobic001G107300 Sobic001G040300 Sobic001G040300 Sobic002G353500--Sobic001G040300 Sobic001G081400 Sobic001G081400 Sobic002G353500--Sobic001G081400 Sobic007G022500 Sobic007G022500 Sobic002G353500--Sobic007G022500 Sobic006G108600 Sobic006G108600 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic002G353500--Sobic004G343600 Sobic009G052500 Sobic009G052500 Sobic002G353500--Sobic009G052500 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic004G019600 Sobic004G019600 Sobic009G231900--Sobic004G019600 Sobic002G204000 Sobic002G204000 Sobic009G231900--Sobic002G204000 Sobic003G316850 Sobic003G316850 Sobic009G231900--Sobic003G316850 Sobic001G532100 Sobic001G532100 Sobic009G231900--Sobic001G532100 Sobic003G434000 Sobic003G434000 Sobic009G231900--Sobic003G434000 Sobic010G051500 Sobic010G051500 Sobic009G231900--Sobic010G051500 Sobic001G370300 Sobic001G370300 Sobic009G231900--Sobic001G370300 Sobic009G258400 Sobic009G258400 Sobic009G231900--Sobic009G258400 Sobic006G049700 Sobic006G049700 Sobic009G231900--Sobic006G049700 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100 Sobic010G085200 Sobic010G085200 Sobic006G272200--Sobic010G085200 Sobic006G272200--Sobic003G119400 Sobic001G362300 Sobic001G362300 Sobic006G272200--Sobic001G362300 Sobic002G394800 Sobic002G394800 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic006G272200--Sobic001G370300 Sobic006G233000 Sobic006G233000 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600
Octagon: transcription factors


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