Gene annotation
Transcriptome id Sobic.002G380000.1
Synonym Sb02g039700
Functional annotation TRM112, putative, expressed
UniProt C5X2H9
Pfam PF03966
Panther DB PTHR12773:SF0 PTHR12773
NCBI CDD KOG1088; Uncharacterized conserved protein
KEGG Orthology K15448; TRM112, multifunctional methyltransferase subunit TRM112
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78190 : Trm112p-like protein
RAP-DB (Rice) LOC_Os07g43020.1 : TRM112, putative, expressed
MaizeGDB (Corn) Zm00025a015239
Brachypodium KQK15230
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G380000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
2 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
3 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
4 Sobic.002G022400 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
6 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
7 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
9 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
10 Sobic.010G038700 expressed protein -
11 Sobic.001G040300 expressed protein -
12 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
13 Sobic.001G069400 expressed protein -
14 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.008G132800 expressed protein -
16 Sobic.002G254650 - -
17 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
18 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
19 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
20 Sobic.005G092800 expressed protein -


Gene co-expression network
sample Sobic002G380000 Sobic002G380000 Sobic005G157200 Sobic005G157200 Sobic002G380000--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic002G380000--Sobic008G058300 Sobic010G029400 Sobic010G029400 Sobic002G380000--Sobic010G029400 Sobic002G022400 Sobic002G022400 Sobic002G380000--Sobic002G022400 Sobic002G007100 Sobic002G007100 Sobic002G380000--Sobic002G007100 Sobic004G152400 Sobic004G152400 Sobic002G380000--Sobic004G152400 Sobic004G002350 Sobic004G002350 Sobic002G380000--Sobic004G002350 Sobic006G052400 Sobic006G052400 Sobic002G380000--Sobic006G052400 Sobic003G025200 Sobic003G025200 Sobic002G380000--Sobic003G025200 Sobic005G157200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic005G157200--Sobic001G529000 Sobic008G058300--Sobic005G157200 Sobic008G058300--Sobic003G025200 Sobic008G058300--Sobic001G331900 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic008G058300--Sobic010G029400 Sobic008G058300--Sobic004G002350 Sobic002G078400 Sobic002G078400 Sobic008G058300--Sobic002G078400 Sobic008G058300--Sobic001G377800 Sobic008G132800 Sobic008G132800 Sobic010G029400--Sobic008G132800 Sobic010G029400--Sobic002G078400 Sobic010G029400--Sobic003G025200 Sobic010G029400--Sobic002G406500 Sobic002G115000 Sobic002G115000 Sobic010G029400--Sobic002G115000 Sobic010G029400--Sobic005G157200 Sobic010G029400--Sobic008G058300 Sobic010G029400--Sobic001G377800 Sobic009G016201 Sobic009G016201 Sobic010G029400--Sobic009G016201 Sobic003G249800 Sobic003G249800 Sobic002G022400--Sobic003G249800 Sobic002G330000 Sobic002G330000 Sobic002G022400--Sobic002G330000 Sobic008G161000 Sobic008G161000 Sobic002G022400--Sobic008G161000 Sobic005G092800 Sobic005G092800 Sobic002G022400--Sobic005G092800 Sobic003G321700 Sobic003G321700 Sobic002G022400--Sobic003G321700 Sobic004G152700 Sobic004G152700 Sobic002G022400--Sobic004G152700 Sobic010G204600 Sobic010G204600 Sobic002G022400--Sobic010G204600 Sobic001G422900 Sobic001G422900 Sobic002G022400--Sobic001G422900 Sobic002G022400--Sobic005G157200 Sobic002G007100--Sobic005G157200 Sobic002G007100--Sobic003G025200 Sobic002G007100--Sobic010G029400 Sobic002G007100--Sobic008G058300 Sobic002G007100--Sobic002G406500 Sobic004G196400 Sobic004G196400 Sobic002G007100--Sobic004G196400 Sobic006G201500 Sobic006G201500 Sobic002G007100--Sobic006G201500 Sobic003G280700 Sobic003G280700 Sobic002G007100--Sobic003G280700 Sobic006G081100 Sobic006G081100 Sobic002G007100--Sobic006G081100 Sobic002G258800 Sobic002G258800 Sobic004G152400--Sobic002G258800 Sobic004G152400--Sobic004G152700 Sobic002G259000 Sobic002G259000 Sobic004G152400--Sobic002G259000 Sobic010G182300 Sobic010G182300 Sobic004G152400--Sobic010G182300 Sobic004G103800 Sobic004G103800 Sobic004G152400--Sobic004G103800 Sobic003G107600 Sobic003G107600 Sobic004G152400--Sobic003G107600 Sobic001G505100 Sobic001G505100 Sobic004G152400--Sobic001G505100 Sobic004G152400--Sobic010G029400 Sobic010G259900 Sobic010G259900 Sobic004G152400--Sobic010G259900 Sobic004G002350--Sobic003G025200 Sobic002G049300 Sobic002G049300 Sobic004G002350--Sobic002G049300 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic001G018800 Sobic001G018800 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic003G025200--Sobic001G377800 Sobic003G025200--Sobic006G081100 Sobic001G085400 Sobic001G085400 Sobic003G025200--Sobic001G085400 Sobic003G025200--Sobic002G406500 Sobic003G025200--Sobic001G058900 Sobic003G025200--Sobic006G201500 Sobic003G025200--Sobic002G049300 Sobic003G025200--Sobic008G058300 Sobic003G025200--Sobic002G115000
Octagon: transcription factors


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