Gene annotation
Transcriptome id Sobic.002G022400.1
Synonym Sb02g002070
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X8R1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF394
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G14300 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g03240.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044948 , Zm00025a016204
Brachypodium -
Barley HORVU2Hr1G061380.2 , HORVU2Hr1G061380.3 , HORVU2Hr1G061380.1
Wheat TraesCS2A02G267500 , TraesCS2D02G256500
Populus -


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cDNA sequences
Sobic.002G022400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
2 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
3 Sobic.008G161000 protein kinase domain containing protein, expressed -
4 Sobic.005G092800 expressed protein -
5 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
6 Sobic.004G152700 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
7 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
8 Sobic.001G422900 zinc finger family protein, putative, expressed -
9 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
10 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
12 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
13 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
14 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
15 Sobic.004G325700 CYPRO4, putative, expressed -
16 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
17 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
18 Sobic.001G324900 proline-rich family protein, putative, expressed -
19 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
20 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic002G022400 Sobic002G022400 Sobic003G249800 Sobic003G249800 Sobic002G022400--Sobic003G249800 Sobic002G330000 Sobic002G330000 Sobic002G022400--Sobic002G330000 Sobic008G161000 Sobic008G161000 Sobic002G022400--Sobic008G161000 Sobic005G092800 Sobic005G092800 Sobic002G022400--Sobic005G092800 Sobic003G321700 Sobic003G321700 Sobic002G022400--Sobic003G321700 Sobic004G152700 Sobic004G152700 Sobic002G022400--Sobic004G152700 Sobic010G204600 Sobic010G204600 Sobic002G022400--Sobic010G204600 Sobic001G422900 Sobic001G422900 Sobic002G022400--Sobic001G422900 Sobic005G157200 Sobic005G157200 Sobic002G022400--Sobic005G157200 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic004G145801 Sobic004G145801 Sobic002G330000--Sobic004G145801 Sobic002G330000--Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic002G330000--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic002G330000--Sobic010G260100 Sobic002G330000--Sobic003G249800 Sobic005G019700 Sobic005G019700 Sobic002G330000--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic002G330000--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic002G330000--Sobic010G230700 Sobic001G390300 Sobic001G390300 Sobic002G330000--Sobic001G390300 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic009G152200 Sobic009G152200 Sobic008G161000--Sobic009G152200 Sobic008G161000--Sobic001G037000 Sobic009G129000 Sobic009G129000 Sobic008G161000--Sobic009G129000 Sobic009G016201 Sobic009G016201 Sobic008G161000--Sobic009G016201 Sobic010G204300 Sobic010G204300 Sobic008G161000--Sobic010G204300 Sobic008G161000--Sobic010G204600 Sobic010G213400 Sobic010G213400 Sobic008G161000--Sobic010G213400 Sobic001G019900 Sobic001G019900 Sobic005G092800--Sobic001G019900 Sobic005G092800--Sobic003G321700 Sobic004G107600 Sobic004G107600 Sobic005G092800--Sobic004G107600 Sobic001G445800 Sobic001G445800 Sobic005G092800--Sobic001G445800 Sobic005G092800--Sobic010G213400 Sobic005G092800--Sobic003G249800 Sobic005G092800--Sobic005G157200 Sobic003G362400 Sobic003G362400 Sobic005G092800--Sobic003G362400 Sobic009G094450 Sobic009G094450 Sobic005G092800--Sobic009G094450 Sobic003G321700--Sobic007G212600 Sobic003G321700--Sobic010G260100 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100 Sobic004G103800 Sobic004G103800 Sobic004G152700--Sobic004G103800 Sobic002G259000 Sobic002G259000 Sobic004G152700--Sobic002G259000 Sobic004G152700--Sobic004G104100 Sobic004G152700--Sobic010G230700 Sobic010G182300 Sobic010G182300 Sobic004G152700--Sobic010G182300 Sobic006G221200 Sobic006G221200 Sobic004G152700--Sobic006G221200 Sobic004G104300 Sobic004G104300 Sobic004G152700--Sobic004G104300 Sobic004G152700--Sobic004G145801 Sobic004G152700--Sobic010G259900 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic003G063200 Sobic003G063200 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic009G023200 Sobic009G023200 Sobic010G204600--Sobic009G023200 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic010G204600--Sobic009G033700 Sobic002G245800 Sobic002G245800 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G422900--Sobic001G037000 Sobic001G422900--Sobic001G095300 Sobic001G422900--Sobic003G181500 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic001G422900--Sobic002G211900 Sobic001G422900--Sobic002G405600 Sobic008G058300 Sobic008G058300 Sobic005G157200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic003G025200 Sobic003G025200 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic010G029400 Sobic010G029400 Sobic005G157200--Sobic010G029400 Sobic005G157200--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic005G157200--Sobic001G529000
Octagon: transcription factors


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