Gene annotation
Transcriptome id Sobic.004G152700.1
Synonym Sb04g020440
Functional annotation ribosomal protein L29, putative, expressed
UniProt -
Pfam PF00831
Panther DB PTHR13872
NCBI CDD KOG3436; 60S ribosomal protein L35
KEGG Orthology K02918; RP-L35e, large subunit ribosomal protein L35e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G02610 : Ribosomal L29 family protein
RAP-DB (Rice) LOC_Os02g30050.1 : ribosomal protein L29, putative, expressed
MaizeGDB (Corn) Zm00025a011883 , Zm00025a055815 , Zm00025a020383
Brachypodium KQJ99550 , KQJ82177
Barley HORVU2Hr1G068120.1 , HORVU2Hr1G068120.3 , HORVU2Hr1G068120.2
Wheat TraesCS2D02G277700 , TraesCS2A02G278600 , TraesCS2B02G296200
Populus -


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cDNA sequences
Sobic.004G152700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
2 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
3 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
5 Sobic.010G182300 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
6 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
7 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
8 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
9 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
10 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
11 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
12 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
13 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
16 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
17 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
18 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
19 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
20 Sobic.002G385100 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e


Gene co-expression network
sample Sobic004G152700 Sobic004G152700 Sobic004G103800 Sobic004G103800 Sobic004G152700--Sobic004G103800 Sobic002G259000 Sobic002G259000 Sobic004G152700--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic004G152700--Sobic004G104100 Sobic010G230700 Sobic010G230700 Sobic004G152700--Sobic010G230700 Sobic010G182300 Sobic010G182300 Sobic004G152700--Sobic010G182300 Sobic006G221200 Sobic006G221200 Sobic004G152700--Sobic006G221200 Sobic004G104300 Sobic004G104300 Sobic004G152700--Sobic004G104300 Sobic004G145801 Sobic004G145801 Sobic004G152700--Sobic004G145801 Sobic010G259900 Sobic010G259900 Sobic004G152700--Sobic010G259900 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G103800--Sobic004G152700 Sobic001G091801 Sobic001G091801 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic002G259000--Sobic004G103800 Sobic002G259000--Sobic004G152700 Sobic010G182600 Sobic010G182600 Sobic002G259000--Sobic010G182600 Sobic001G046300 Sobic001G046300 Sobic002G259000--Sobic001G046300 Sobic002G259000--Sobic010G182300 Sobic002G259000--Sobic004G145801 Sobic002G258800 Sobic002G258800 Sobic002G259000--Sobic002G258800 Sobic002G259000--Sobic004G104100 Sobic002G364100 Sobic002G364100 Sobic002G259000--Sobic002G364100 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic005G019700 Sobic005G019700 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic004G104100--Sobic009G050300 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic010G182300--Sobic002G258800 Sobic010G182300--Sobic002G259000 Sobic010G182300--Sobic004G152700 Sobic010G182300--Sobic004G103800 Sobic010G182300--Sobic010G259900 Sobic010G182300--Sobic001G046300 Sobic010G260100 Sobic010G260100 Sobic010G182300--Sobic010G260100 Sobic009G065400 Sobic009G065400 Sobic010G182300--Sobic009G065400 Sobic010G182300--Sobic010G182600 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic004G104300--Sobic004G103800 Sobic004G104300--Sobic004G104100 Sobic004G104300--Sobic010G259900 Sobic004G104300--Sobic010G230700 Sobic003G408100 Sobic003G408100 Sobic004G104300--Sobic003G408100 Sobic004G104300--Sobic007G018300 Sobic004G104300--Sobic001G091801 Sobic003G322400 Sobic003G322400 Sobic004G104300--Sobic003G322400 Sobic004G104300--Sobic005G019700 Sobic004G145801--Sobic001G091801 Sobic004G145801--Sobic004G104100 Sobic004G145801--Sobic005G019700 Sobic007G212600 Sobic007G212600 Sobic004G145801--Sobic007G212600 Sobic004G145801--Sobic010G230700 Sobic004G145801--Sobic004G103800 Sobic004G280700 Sobic004G280700 Sobic004G145801--Sobic004G280700 Sobic001G054900 Sobic001G054900 Sobic004G145801--Sobic001G054900 Sobic004G145801--Sobic004G104300 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic010G259900--Sobic003G322400 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic003G321700 Sobic003G321700 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic010G259900--Sobic001G046300
Octagon: transcription factors


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