Gene annotation
Transcriptome id Sobic.002G385100.1
Synonym Sb02g040120
Functional annotation 40S ribosomal protein S9-2, putative, expressed
UniProt C5X364
Pfam PF00163 PF01479
Panther DB PTHR11831 PTHR11831:SF11
NCBI CDD KOG3301; Ribosomal protein S4
KEGG Orthology K02997; RP-S9e, small subunit ribosomal protein S9e
Gene Ontology GO:0005622; intracellular GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G39850 : Ribosomal protein S4
RAP-DB (Rice) LOC_Os11g38959.1 : 40S ribosomal protein S9-2, putative, expressed
MaizeGDB (Corn) Zm00025a052075 , Zm00025a002671 , Zm00025a015259 , Zm00025a048842
Brachypodium KQK15092 , KQJ86681
Barley HORVU2Hr1G028510.4 , HORVU2Hr1G028510.2 , HORVU2Hr1G028510.3 , HORVU2Hr1G028510.1
Wheat TraesCS2B02G183500 , TraesCS2D02G164100
Populus PNS98431 , PNS98430 , PNS98434


JBrowse

Open New Page


cDNA sequences
Sobic.002G385100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
2 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
5 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
6 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
7 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
8 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
9 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
10 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
11 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
12 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
13 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
14 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
15 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
17 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
18 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
19 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
20 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic002G385100 Sobic002G385100 Sobic004G331400 Sobic004G331400 Sobic002G385100--Sobic004G331400 Sobic004G103800 Sobic004G103800 Sobic002G385100--Sobic004G103800 Sobic004G104300 Sobic004G104300 Sobic002G385100--Sobic004G104300 Sobic006G221200 Sobic006G221200 Sobic002G385100--Sobic006G221200 Sobic007G019000 Sobic007G019000 Sobic002G385100--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G385100--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic002G385100--Sobic007G178600 Sobic004G104100 Sobic004G104100 Sobic002G385100--Sobic004G104100 Sobic006G260400 Sobic006G260400 Sobic002G385100--Sobic006G260400 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic003G346600 Sobic003G346600 Sobic004G331400--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic001G091801 Sobic001G091801 Sobic004G331400--Sobic001G091801 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic004G104300--Sobic004G103800 Sobic004G104300--Sobic004G104100 Sobic010G259900 Sobic010G259900 Sobic004G104300--Sobic010G259900 Sobic004G104300--Sobic010G230700 Sobic004G104300--Sobic003G408100 Sobic004G104300--Sobic007G018300 Sobic004G104300--Sobic001G091801 Sobic003G322400 Sobic003G322400 Sobic004G104300--Sobic003G322400 Sobic005G019700 Sobic005G019700 Sobic004G104300--Sobic005G019700 Sobic006G221200--Sobic004G104100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic007G019400 Sobic007G019400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic010G206200 Sobic010G206200 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic010G166100--Sobic004G104100 Sobic010G166100--Sobic006G221200 Sobic010G166100--Sobic004G103800 Sobic010G166100--Sobic007G178600 Sobic010G166100--Sobic007G019000 Sobic010G166100--Sobic004G322200 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic010G166100--Sobic002G047600 Sobic004G008400 Sobic004G008400 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic007G178600--Sobic002G047600 Sobic004G104100--Sobic001G091801 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic009G166500 Sobic009G166500 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300 Sobic006G260400--Sobic004G331400 Sobic002G255300 Sobic002G255300 Sobic006G260400--Sobic002G255300 Sobic006G260400--Sobic003G346600 Sobic006G260400--Sobic007G178600 Sobic006G260400--Sobic010G206200 Sobic006G260400--Sobic009G163800 Sobic006G260400--Sobic010G166100 Sobic006G260400--Sobic001G376600 Sobic006G260400--Sobic006G221200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.