Gene annotation
Transcriptome id Sobic.010G182300.3,Sobic.010G182300.2,Sobic.010G182300.1
Synonym Sb10g023350
Functional annotation elongation factor Tu, putative, expressed
UniProt -
Pfam PF03144 PF03143 PF00009
Panther DB PTHR23115 PTHR23115:SF144
NCBI CDD -
KEGG Orthology K03231; elongation factor 1-alpha
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G07920 : GTP binding Elongation factor Tu family protein
RAP-DB (Rice) LOC_Os03g08010.1,LOC_Os03g08050.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a043311 , Zm00025a051236 , Zm00025a043337 , Zm00025a043313 , Zm00025a048393 , Zm00025a036927 , Zm00025a036925 , Zm00025a042244 , Zm00025a014911 , Zm00025a043309 , Zm00025a043304
Brachypodium PNS24237 , KQJ87649 , KQJ87648 , KQK12914 , KQK12915 , KQK12916 , KQK12917 , KQK12913 , KQK22190
Barley HORVU2Hr1G013680.6 , HORVU2Hr1G013680.7 , HORVU2Hr1G013680.4 , HORVU2Hr1G013680.5 , HORVU2Hr1G013680.2 , HORVU2Hr1G013680.3 , HORVU2Hr1G013680.1 , HORVU4Hr1G056830.1 , HORVU4Hr1G056830.2 , HORVU4Hr1G056830.3 , HORVU5Hr1G100200.6 , HORVU5Hr1G100200.4 , HORVU5Hr1G100200.5 , HORVU5Hr1G100200.2 , HORVU5Hr1G100200.3 , HORVU5Hr1G100200.1 , HORVU6Hr1G085370.1 , HORVU6Hr1G085370.3 , HORVU6Hr1G085370.2 , HORVU6Hr1G085370.5 , HORVU6Hr1G085370.4 , HORVU6Hr1G085370.7 , HORVU6Hr1G085370.6 , HORVU0Hr1G017020.1 , HORVU0Hr1G017020.2 , HORVU0Hr1G017020.3 , HORVU0Hr1G017020.4 , HORVU5Hr1G051280.1 , HORVU6Hr1G085320.1 , HORVU4Hr1G056740.8 , HORVU4Hr1G056740.2 , HORVU4Hr1G056740.3 , HORVU5Hr1G100700.5 , HORVU5Hr1G100700.4 , HORVU5Hr1G100700.3 , HORVU5Hr1G100700.2 , HORVU5Hr1G100700.1 , HORVU4Hr1G056740.5 , HORVU6Hr1G085320.4 , HORVU6Hr1G085320.2 , HORVU6Hr1G085320.3 , HORVU4Hr1G056740.1 , HORVU4Hr1G056740.6 , HORVU4Hr1G056740.7 , HORVU4Hr1G056740.4 , HORVU4Hr1G056820.4 , HORVU4Hr1G056820.3 , HORVU4Hr1G056820.2 , HORVU4Hr1G056820.1
Wheat TraesCS4B02G196800 , TraesCS4B02G196800 , TraesCS2D02G320500 , TraesCS4D02G197200 , TraesCS2A02G083000 , TraesCS2B02G097100 , TraesCS2B02G097300 , TraesCS2D02G320300 , TraesCS5A02G415600 , TraesCS5B02G418200 , TraesCS5B02G418200 , TraesCS5B02G418100 , TraesCS2D02G080900 , TraesCS5D02G423300 , TraesCS2A02G083300 , TraesCS5D02G423300 , TraesCS5D02G423300 , TraesCS4A02G107600 , TraesCS5D02G423400 , TraesCS5A02G415400 , TraesCS4B02G196900 , TraesCS4B02G196900 , TraesCS4A02G107700 , TraesCS2D02G080800 , TraesCS4D02G197100
Populus PNT22659 , PNT22658 , PNT22657 , PNT22655 , PNT17990 , PNT17991 , PNT17992 , PNT17993 , PNT22664 , PNT17987 , PNT17989 , PNT17988 , PNT31383 , PNT31382 , PNS98617 , PNS98616 , PNS98618 , PNT18006 , PNT18005


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cDNA sequences
Sobic.010G182300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G258800 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
2 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
3 Sobic.004G152700 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
4 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
5 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
6 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
7 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
8 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
9 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
10 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
12 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
14 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
15 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
16 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
18 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
19 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
20 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e


Gene co-expression network
sample Sobic010G182300 Sobic010G182300 Sobic002G258800 Sobic002G258800 Sobic010G182300--Sobic002G258800 Sobic002G259000 Sobic002G259000 Sobic010G182300--Sobic002G259000 Sobic004G152700 Sobic004G152700 Sobic010G182300--Sobic004G152700 Sobic004G103800 Sobic004G103800 Sobic010G182300--Sobic004G103800 Sobic010G259900 Sobic010G259900 Sobic010G182300--Sobic010G259900 Sobic001G046300 Sobic001G046300 Sobic010G182300--Sobic001G046300 Sobic010G260100 Sobic010G260100 Sobic010G182300--Sobic010G260100 Sobic009G065400 Sobic009G065400 Sobic010G182300--Sobic009G065400 Sobic010G182600 Sobic010G182600 Sobic010G182300--Sobic010G182600 Sobic002G258800--Sobic010G182300 Sobic002G258800--Sobic002G259000 Sobic002G258800--Sobic004G152700 Sobic004G152400 Sobic004G152400 Sobic002G258800--Sobic004G152400 Sobic002G258800--Sobic001G046300 Sobic002G258800--Sobic004G103800 Sobic002G258800--Sobic010G259900 Sobic003G321700 Sobic003G321700 Sobic002G258800--Sobic003G321700 Sobic002G258800--Sobic009G065400 Sobic002G259000--Sobic004G103800 Sobic002G259000--Sobic004G152700 Sobic002G259000--Sobic010G182600 Sobic002G259000--Sobic001G046300 Sobic002G259000--Sobic010G182300 Sobic004G145801 Sobic004G145801 Sobic002G259000--Sobic004G145801 Sobic002G259000--Sobic002G258800 Sobic004G104100 Sobic004G104100 Sobic002G259000--Sobic004G104100 Sobic002G364100 Sobic002G364100 Sobic002G259000--Sobic002G364100 Sobic004G152700--Sobic004G103800 Sobic004G152700--Sobic002G259000 Sobic004G152700--Sobic004G104100 Sobic010G230700 Sobic010G230700 Sobic004G152700--Sobic010G230700 Sobic004G152700--Sobic010G182300 Sobic006G221200 Sobic006G221200 Sobic004G152700--Sobic006G221200 Sobic004G104300 Sobic004G104300 Sobic004G152700--Sobic004G104300 Sobic004G152700--Sobic004G145801 Sobic004G152700--Sobic010G259900 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G103800--Sobic004G152700 Sobic001G091801 Sobic001G091801 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic003G322400 Sobic003G322400 Sobic010G259900--Sobic003G322400 Sobic007G212600 Sobic007G212600 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic010G259900--Sobic001G046300 Sobic001G046300--Sobic007G212600 Sobic001G046300--Sobic004G103800 Sobic001G046300--Sobic001G091801 Sobic001G046300--Sobic002G364100 Sobic001G046300--Sobic002G259000 Sobic001G046300--Sobic004G104100 Sobic001G011200 Sobic001G011200 Sobic001G046300--Sobic001G011200 Sobic001G046300--Sobic004G104300 Sobic009G163800 Sobic009G163800 Sobic001G046300--Sobic009G163800 Sobic010G260100--Sobic010G259900 Sobic010G260100--Sobic007G212600 Sobic010G260100--Sobic003G321700 Sobic010G260100--Sobic004G104300 Sobic010G260100--Sobic003G322400 Sobic010G260100--Sobic001G046300 Sobic010G260100--Sobic001G091801 Sobic010G260100--Sobic004G103800 Sobic001G046100 Sobic001G046100 Sobic010G260100--Sobic001G046100 Sobic009G065400--Sobic001G046300 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic009G065400--Sobic001G011200 Sobic009G065400--Sobic002G364100 Sobic001G377800 Sobic001G377800 Sobic009G065400--Sobic001G377800 Sobic009G065400--Sobic002G259000 Sobic002G374900 Sobic002G374900 Sobic009G065400--Sobic002G374900 Sobic009G065400--Sobic010G182300 Sobic010G182600--Sobic002G259000 Sobic010G182600--Sobic001G046300 Sobic010G182200 Sobic010G182200 Sobic010G182600--Sobic010G182200 Sobic010G182600--Sobic002G364100 Sobic010G182600--Sobic004G145801 Sobic010G182600--Sobic001G091801 Sobic010G182600--Sobic009G065400 Sobic002G406500 Sobic002G406500 Sobic010G182600--Sobic002G406500 Sobic002G364500 Sobic002G364500 Sobic010G182600--Sobic002G364500
Octagon: transcription factors


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