Gene annotation
| Transcriptome id | Sobic.004G325700.1 |
|---|---|
| Synonym | Sb04g035550 |
| Functional annotation | CYPRO4, putative, expressed |
| UniProt | C5XUC3 |
| Pfam | PF08553 |
| Panther DB | PTHR31913 PTHR31913:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G33400 : Vacuolar import/degradation, Vid27-related protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g54780.1 : CYPRO4, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032972 |
| Brachypodium | KQK01088 |
| Barley | HORVU6Hr1G083930.1 , HORVU6Hr1G083930.3 , HORVU6Hr1G083930.2 , HORVU6Hr1G083930.5 , HORVU6Hr1G083930.4 , HORVU6Hr1G083930.6 |
| Wheat | TraesCS6D02G332400 |
| Populus | - |
JBrowse
| Sobic.004G325700 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G161000 | protein kinase domain containing protein, expressed | - |
| 2 | Sobic.006G179500 | protein kinase APK1B, chloroplast precursor, putative, expressed | - |
| 3 | Sobic.003G181500 | ZOS1-09 - C2H2 zinc finger protein, expressed | - |
| 4 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 5 | Sobic.003G249800 | 60S ribosomal protein L18a-1, putative, expressed | - |
| 6 | Sobic.001G304700 | proline oxidase, mitochondrial precursor, putative, expressed | K00318: PRODH, fadM, proline dehydrogenase |
| 7 | Sobic.009G033700 | protein kinase, putative, expressed | K13436: pto-interacting protein 1 |
| 8 | Sobic.001G095300 | prenylated rab acceptor, putative, expressed | - |
| 9 | Sobic.006G062800 | OTU-like cysteine protease family protein, putative, expressed | - |
| 10 | Sobic.003G300800 | GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed | K04125: gibberellin 2beta-dioxygenase |
| 11 | Sobic.004G280800 | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed | K11805: DCAF7, DDB1- and CUL4-associated factor 7 |
| 12 | Sobic.001G422900 | zinc finger family protein, putative, expressed | - |
| 13 | Sobic.009G129000 | E3 ubiquitin-protein ligase MGRN1, putative, expressed | - |
| 14 | Sobic.002G022400 | RNA recognition motif containing protein, putative, expressed | K14411: RNA-binding protein Musashi |
| 15 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 16 | Sobic.003G323700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub6 - Putative Subtilisin homologue, expressed | - |
| 17 | Sobic.001G538866 | - | - |
| 18 | Sobic.006G165100 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 19 | Sobic.007G107850 | - | - |
| 20 | Sobic.003G324400 | Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
