Gene annotation
Transcriptome id Sobic.004G152400.1
Synonym Sb04g020240
Functional annotation ribosomal protein L29, putative, expressed
UniProt C5XSJ0
Pfam PF00831
Panther DB PTHR13872
NCBI CDD KOG3436; 60S ribosomal protein L35
KEGG Orthology K02918; RP-L35e, large subunit ribosomal protein L35e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G02610 : Ribosomal L29 family protein
RAP-DB (Rice) LOC_Os02g30050.1 : ribosomal protein L29, putative, expressed
MaizeGDB (Corn) Zm00025a011883 , Zm00025a055815 , Zm00025a020383
Brachypodium KQJ99550 , KQJ82177
Barley HORVU2Hr1G068120.1 , HORVU2Hr1G068120.3 , HORVU2Hr1G068120.2
Wheat TraesCS2D02G277700 , TraesCS2A02G278600 , TraesCS2B02G296200
Populus -


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cDNA sequences
Sobic.004G152400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G258800 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
2 Sobic.004G152700 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
3 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
4 Sobic.010G182300 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
5 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
6 Sobic.003G107600 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
7 Sobic.001G505100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
8 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
9 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
10 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
11 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
12 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
13 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
14 Sobic.002G022400 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
15 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
16 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
17 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
19 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
20 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e


Gene co-expression network
sample Sobic004G152400 Sobic004G152400 Sobic002G258800 Sobic002G258800 Sobic004G152400--Sobic002G258800 Sobic004G152700 Sobic004G152700 Sobic004G152400--Sobic004G152700 Sobic002G259000 Sobic002G259000 Sobic004G152400--Sobic002G259000 Sobic010G182300 Sobic010G182300 Sobic004G152400--Sobic010G182300 Sobic004G103800 Sobic004G103800 Sobic004G152400--Sobic004G103800 Sobic003G107600 Sobic003G107600 Sobic004G152400--Sobic003G107600 Sobic001G505100 Sobic001G505100 Sobic004G152400--Sobic001G505100 Sobic010G029400 Sobic010G029400 Sobic004G152400--Sobic010G029400 Sobic010G259900 Sobic010G259900 Sobic004G152400--Sobic010G259900 Sobic002G258800--Sobic010G182300 Sobic002G258800--Sobic002G259000 Sobic002G258800--Sobic004G152700 Sobic002G258800--Sobic004G152400 Sobic001G046300 Sobic001G046300 Sobic002G258800--Sobic001G046300 Sobic002G258800--Sobic004G103800 Sobic002G258800--Sobic010G259900 Sobic003G321700 Sobic003G321700 Sobic002G258800--Sobic003G321700 Sobic009G065400 Sobic009G065400 Sobic002G258800--Sobic009G065400 Sobic004G152700--Sobic004G103800 Sobic004G152700--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic004G152700--Sobic004G104100 Sobic010G230700 Sobic010G230700 Sobic004G152700--Sobic010G230700 Sobic004G152700--Sobic010G182300 Sobic006G221200 Sobic006G221200 Sobic004G152700--Sobic006G221200 Sobic004G104300 Sobic004G104300 Sobic004G152700--Sobic004G104300 Sobic004G145801 Sobic004G145801 Sobic004G152700--Sobic004G145801 Sobic004G152700--Sobic010G259900 Sobic002G259000--Sobic004G103800 Sobic002G259000--Sobic004G152700 Sobic010G182600 Sobic010G182600 Sobic002G259000--Sobic010G182600 Sobic002G259000--Sobic001G046300 Sobic002G259000--Sobic010G182300 Sobic002G259000--Sobic004G145801 Sobic002G259000--Sobic002G258800 Sobic002G259000--Sobic004G104100 Sobic002G364100 Sobic002G364100 Sobic002G259000--Sobic002G364100 Sobic010G182300--Sobic002G258800 Sobic010G182300--Sobic002G259000 Sobic010G182300--Sobic004G152700 Sobic010G182300--Sobic004G103800 Sobic010G182300--Sobic010G259900 Sobic010G182300--Sobic001G046300 Sobic010G260100 Sobic010G260100 Sobic010G182300--Sobic010G260100 Sobic010G182300--Sobic009G065400 Sobic010G182300--Sobic010G182600 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G103800--Sobic004G152700 Sobic001G091801 Sobic001G091801 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic003G107600--Sobic010G182600 Sobic003G107600--Sobic002G259000 Sobic010G173100 Sobic010G173100 Sobic003G107600--Sobic010G173100 Sobic003G107600--Sobic002G258800 Sobic003G107600--Sobic004G152400 Sobic003G107600--Sobic010G259900 Sobic003G107600--Sobic010G260100 Sobic003G107600--Sobic001G046300 Sobic003G107600--Sobic010G182300 Sobic004G345500 Sobic004G345500 Sobic001G505100--Sobic004G345500 Sobic001G505100--Sobic004G152400 Sobic001G505100--Sobic004G103800 Sobic001G505100--Sobic007G019000 Sobic001G505100--Sobic010G230700 Sobic001G505100--Sobic007G018300 Sobic002G330000 Sobic002G330000 Sobic001G505100--Sobic002G330000 Sobic003G344600 Sobic003G344600 Sobic001G505100--Sobic003G344600 Sobic002G115000 Sobic002G115000 Sobic001G505100--Sobic002G115000 Sobic008G132800 Sobic008G132800 Sobic010G029400--Sobic008G132800 Sobic002G078400 Sobic002G078400 Sobic010G029400--Sobic002G078400 Sobic003G025200 Sobic003G025200 Sobic010G029400--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic010G029400--Sobic002G406500 Sobic010G029400--Sobic002G115000 Sobic005G157200 Sobic005G157200 Sobic010G029400--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic010G029400--Sobic008G058300 Sobic001G377800 Sobic001G377800 Sobic010G029400--Sobic001G377800 Sobic009G016201 Sobic009G016201 Sobic010G029400--Sobic009G016201 Sobic010G259900--Sobic010G260100 Sobic010G259900--Sobic004G104300 Sobic003G322400 Sobic003G322400 Sobic010G259900--Sobic003G322400 Sobic007G212600 Sobic007G212600 Sobic010G259900--Sobic007G212600 Sobic010G259900--Sobic004G103800 Sobic010G259900--Sobic003G321700 Sobic010G259900--Sobic007G018300 Sobic010G259900--Sobic001G091801 Sobic010G259900--Sobic001G046300
Octagon: transcription factors


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