Gene annotation
Transcriptome id Sobic.001G505100.1
Synonym 1, GAMMA-TIP1, GAMMA-TIP, Sb01g047140, TIP1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aquaporin protein, putative, expressed
UniProt C5WXY9
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF52
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09873; aquaporin TIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT2G36830 : gamma tonoplast intrinsic protein
RAP-DB (Rice) LOC_Os03g05290.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a039037 , Zm00025a010306 , Zm00025a000620 , Zm00025a020879 , Zm00025a056873 , Zm00025a032208
Brachypodium KQK11808 , KQK23668 , KQJ83938
Barley HORVU7Hr1G081770.8 , HORVU7Hr1G081770.9 , HORVU7Hr1G081770.4 , HORVU7Hr1G081770.5 , HORVU7Hr1G081770.6 , HORVU7Hr1G081770.7 , HORVU7Hr1G081770.1 , HORVU7Hr1G081770.2 , HORVU7Hr1G081770.3 , HORVU3Hr1G038940.1 , HORVU7Hr1G081770.10 , HORVU2Hr1G013110.1 , HORVU3Hr1G094900.1 , HORVU2Hr1G097780.5 , HORVU2Hr1G097780.4 , HORVU2Hr1G097780.3 , HORVU2Hr1G097780.2 , HORVU2Hr1G097780.1 , HORVU4Hr1G079230.5 , HORVU3Hr1G116790.1 , HORVU4Hr1G079230.4 , HORVU3Hr1G116790.3 , HORVU3Hr1G116790.2 , HORVU4Hr1G079230.1 , HORVU3Hr1G116790.4 , HORVU4Hr1G079230.3 , HORVU4Hr1G079230.2 , HORVU3Hr1G116790.9 , HORVU3Hr1G116790.5 , HORVU3Hr1G116790.6 , HORVU3Hr1G116790.12
Wheat TraesCS6D02G232100 , TraesCS7A02G331300 , TraesCS7D02G339600 , TraesCS7D02G339600 , TraesCS7D02G339600 , TraesCS2A02G414100 , TraesCS4A02G410800 , TraesCS4B02G310900 , TraesCS3D02G540900 , TraesCS3A02G535300 , TraesCS6A02G250300 , TraesCS2D02G411400 , TraesCS3B02G608500 , TraesCS2B02G433200 , TraesCS7B02G243000 , TraesCS7B02G243000 , TraesCS4D02G308800
Populus -


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cDNA sequences
Sobic.001G505100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G345500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
3 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
6 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
7 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
8 Sobic.003G344600 BAG domain containing protein, expressed -
9 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
10 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
11 Sobic.004G152700 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
12 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
13 Sobic.004G262400 expressed protein -
14 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
15 Sobic.003G048000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
17 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
18 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
20 Sobic.007G090463 - K08235: xyloglucan:xyloglucosyl transferase


Gene co-expression network
sample Sobic001G505100 Sobic001G505100 Sobic004G345500 Sobic004G345500 Sobic001G505100--Sobic004G345500 Sobic004G152400 Sobic004G152400 Sobic001G505100--Sobic004G152400 Sobic004G103800 Sobic004G103800 Sobic001G505100--Sobic004G103800 Sobic007G019000 Sobic007G019000 Sobic001G505100--Sobic007G019000 Sobic010G230700 Sobic010G230700 Sobic001G505100--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic001G505100--Sobic007G018300 Sobic002G330000 Sobic002G330000 Sobic001G505100--Sobic002G330000 Sobic003G344600 Sobic003G344600 Sobic001G505100--Sobic003G344600 Sobic002G115000 Sobic002G115000 Sobic001G505100--Sobic002G115000 Sobic003G160700 Sobic003G160700 Sobic004G345500--Sobic003G160700 Sobic001G502900 Sobic001G502900 Sobic004G345500--Sobic001G502900 Sobic005G113300 Sobic005G113300 Sobic004G345500--Sobic005G113300 Sobic001G475500 Sobic001G475500 Sobic004G345500--Sobic001G475500 Sobic001G031700 Sobic001G031700 Sobic004G345500--Sobic001G031700 Sobic003G125650 Sobic003G125650 Sobic004G345500--Sobic003G125650 Sobic001G295200 Sobic001G295200 Sobic004G345500--Sobic001G295200 Sobic010G221300 Sobic010G221300 Sobic004G345500--Sobic010G221300 Sobic007G197800 Sobic007G197800 Sobic004G345500--Sobic007G197800 Sobic002G258800 Sobic002G258800 Sobic004G152400--Sobic002G258800 Sobic004G152700 Sobic004G152700 Sobic004G152400--Sobic004G152700 Sobic002G259000 Sobic002G259000 Sobic004G152400--Sobic002G259000 Sobic010G182300 Sobic010G182300 Sobic004G152400--Sobic010G182300 Sobic004G152400--Sobic004G103800 Sobic003G107600 Sobic003G107600 Sobic004G152400--Sobic003G107600 Sobic004G152400--Sobic001G505100 Sobic010G029400 Sobic010G029400 Sobic004G152400--Sobic010G029400 Sobic010G259900 Sobic010G259900 Sobic004G152400--Sobic010G259900 Sobic004G104100 Sobic004G104100 Sobic004G103800--Sobic004G104100 Sobic004G104300 Sobic004G104300 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G103800--Sobic004G152700 Sobic001G091801 Sobic001G091801 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic004G103800--Sobic007G018300 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic007G019000--Sobic009G050300 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic005G019700 Sobic005G019700 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic007G018300--Sobic010G230700 Sobic007G018300--Sobic005G019700 Sobic009G215200 Sobic009G215200 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic007G018300--Sobic006G116700 Sobic001G016400 Sobic001G016400 Sobic007G018300--Sobic001G016400 Sobic007G018300--Sobic007G019000 Sobic007G018300--Sobic007G197800 Sobic007G018300--Sobic001G054900 Sobic004G145801 Sobic004G145801 Sobic002G330000--Sobic004G145801 Sobic003G321700 Sobic003G321700 Sobic002G330000--Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic002G330000--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic002G330000--Sobic010G260100 Sobic003G249800 Sobic003G249800 Sobic002G330000--Sobic003G249800 Sobic002G330000--Sobic005G019700 Sobic002G330000--Sobic001G091801 Sobic002G330000--Sobic010G230700 Sobic001G390300 Sobic001G390300 Sobic002G330000--Sobic001G390300 Sobic003G344600--Sobic003G249800 Sobic001G009500 Sobic001G009500 Sobic003G344600--Sobic001G009500 Sobic003G429000 Sobic003G429000 Sobic003G344600--Sobic003G429000 Sobic009G180000 Sobic009G180000 Sobic003G344600--Sobic009G180000 Sobic003G344600--Sobic001G054900 Sobic002G282400 Sobic002G282400 Sobic003G344600--Sobic002G282400 Sobic002G335300 Sobic002G335300 Sobic003G344600--Sobic002G335300 Sobic003G344600--Sobic002G330000 Sobic010G237000 Sobic010G237000 Sobic003G344600--Sobic010G237000 Sobic001G085400 Sobic001G085400 Sobic002G115000--Sobic001G085400 Sobic002G115000--Sobic007G019000 Sobic001G058900 Sobic001G058900 Sobic002G115000--Sobic001G058900 Sobic002G304900 Sobic002G304900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic003G249700 Sobic003G249700 Sobic002G115000--Sobic003G249700 Sobic006G201500 Sobic006G201500 Sobic002G115000--Sobic006G201500 Sobic002G115000--Sobic007G178600 Sobic002G049300 Sobic002G049300 Sobic002G115000--Sobic002G049300
Octagon: transcription factors


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