Gene annotation
Transcriptome id Sobic.006G052400.1
Synonym Sb06g013920
Functional annotation LSM domain containing protein, expressed
UniProt C5YET4
Pfam PF01423
Panther DB PTHR11021 PTHR11021:SF5
NCBI CDD KOG1783; Small nuclear ribonucleoprotein F
KEGG Orthology K12625; U6 snRNA-associated Sm-like protein LSm6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43810 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os02g30624.2 : LSM domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ99589 , KQJ82284 , PNT68675
Barley -
Wheat TraesCS2B02G301300 , TraesCS2A02G284300 , TraesCS2D02G283200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
2 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
3 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
4 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
6 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
7 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
8 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
9 Sobic.009G117000 expressed protein -
10 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
11 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
12 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
13 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
14 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
15 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
16 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
17 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
18 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
19 Sobic.010G267900 expressed protein -
20 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20


Gene co-expression network
sample Sobic006G052400 Sobic006G052400 Sobic008G058300 Sobic008G058300 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G115000 Sobic006G115000 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic003G018600 Sobic003G018600 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic005G157200 Sobic005G157200 Sobic008G058300--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic008G058300--Sobic003G025200 Sobic001G331900 Sobic001G331900 Sobic008G058300--Sobic001G331900 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic010G029400 Sobic010G029400 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic002G078400 Sobic002G078400 Sobic008G058300--Sobic002G078400 Sobic001G377800 Sobic001G377800 Sobic008G058300--Sobic001G377800 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic009G233400 Sobic009G233400 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic009G050200--Sobic003G018600 Sobic009G050200--Sobic006G052400 Sobic009G050200--Sobic008G058300 Sobic009G050200--Sobic001G331900 Sobic009G050200--Sobic005G157200 Sobic001G018800 Sobic001G018800 Sobic009G050200--Sobic001G018800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic009G050200--Sobic004G002350 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic006G115000--Sobic003G018600 Sobic002G286900 Sobic002G286900 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic001G225700--Sobic003G249700 Sobic006G081100 Sobic006G081100 Sobic001G225700--Sobic006G081100 Sobic008G108601 Sobic008G108601 Sobic001G225700--Sobic008G108601 Sobic007G178600 Sobic007G178600 Sobic001G225700--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic001G225700--Sobic002G047600 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic001G225700--Sobic002G115000 Sobic001G025600 Sobic001G025600 Sobic003G442400--Sobic001G025600 Sobic003G442400--Sobic006G052400 Sobic004G103700 Sobic004G103700 Sobic003G442400--Sobic004G103700 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G287300 Sobic003G287300 Sobic003G442400--Sobic003G287300 Sobic003G362400 Sobic003G362400 Sobic003G442400--Sobic003G362400 Sobic003G442400--Sobic003G018600 Sobic003G442400--Sobic006G115000 Sobic003G018600--Sobic002G286900 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G018600--Sobic003G249700 Sobic006G211200 Sobic006G211200 Sobic009G117000--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic009G117000--Sobic007G019000 Sobic009G117000--Sobic002G115000 Sobic009G117000--Sobic001G377800 Sobic004G322200 Sobic004G322200 Sobic009G117000--Sobic004G322200 Sobic006G138100 Sobic006G138100 Sobic009G117000--Sobic006G138100 Sobic009G117000--Sobic008G058300 Sobic006G216600 Sobic006G216600 Sobic009G117000--Sobic006G216600 Sobic009G117000--Sobic006G052400
Octagon: transcription factors


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