Gene annotation
Transcriptome id Sobic.003G367900.1
Synonym Sb03g040930
Functional annotation LSM domain containing protein, expressed
UniProt C5XQM8
Pfam PF01423
Panther DB PTHR13110
NCBI CDD KOG3460; Small nuclear ribonucleoprotein (snRNP) LSM3
KEGG Orthology K12622; U6 snRNA-associated Sm-like protein LSm3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76860 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os01g64690.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026716
Brachypodium KQK10766
Barley HORVU1Hr1G075110.10 , HORVU1Hr1G075110.9 , HORVU3Hr1G083300.2 , HORVU3Hr1G083300.1
Wheat TraesCS1B02G283200 , TraesCS3A02G378200 , TraesCS1D02G273400 , TraesCS1A02G273400 , TraesCS3D02G371500
Populus -


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cDNA sequences
Sobic.003G367900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
2 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
3 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.006G281200 csAtPR5, putative, expressed -
5 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
6 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
7 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
9 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
10 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
11 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
13 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
14 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
15 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
16 Sobic.008G127500 expressed protein -
17 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
18 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
19 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
20 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7


Gene co-expression network
sample Sobic003G367900 Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic001G096100 Sobic001G096100 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G127700 Sobic003G127700 Sobic003G367900--Sobic003G127700 Sobic002G331300 Sobic002G331300 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic009G258600 Sobic009G258600 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic008G058300 Sobic008G058300 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic006G052400--Sobic001G096100 Sobic006G115000 Sobic006G115000 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic003G018600 Sobic003G018600 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic003G003000 Sobic003G003000 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic006G281200--Sobic001G404100 Sobic006G281200--Sobic008G100000 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic002G378401 Sobic002G378401 Sobic003G127700--Sobic002G378401 Sobic002G116200 Sobic002G116200 Sobic003G127700--Sobic002G116200 Sobic003G127700--Sobic003G367900 Sobic010G210000 Sobic010G210000 Sobic003G127700--Sobic010G210000 Sobic007G068000 Sobic007G068000 Sobic003G127700--Sobic007G068000 Sobic003G127700--Sobic009G258600 Sobic010G008100 Sobic010G008100 Sobic003G127700--Sobic010G008100 Sobic002G280200 Sobic002G280200 Sobic003G127700--Sobic002G280200 Sobic003G127700--Sobic009G050200 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic004G175700--Sobic001G404100 Sobic004G175700--Sobic003G367900 Sobic004G175700--Sobic008G137600 Sobic002G279000 Sobic002G279000 Sobic004G175700--Sobic002G279000 Sobic007G152400 Sobic007G152400 Sobic004G175700--Sobic007G152400 Sobic001G532100 Sobic001G532100 Sobic004G175700--Sobic001G532100 Sobic006G079900 Sobic006G079900 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic001G285300 Sobic001G285300 Sobic004G175700--Sobic001G285300 Sobic009G258600--Sobic003G127700 Sobic009G258600--Sobic010G210000 Sobic009G258600--Sobic003G367900 Sobic003G028100 Sobic003G028100 Sobic009G258600--Sobic003G028100 Sobic009G012700 Sobic009G012700 Sobic009G258600--Sobic009G012700 Sobic004G137900 Sobic004G137900 Sobic009G258600--Sobic004G137900 Sobic009G258600--Sobic002G331300 Sobic009G258600--Sobic001G096100 Sobic003G190800 Sobic003G190800 Sobic009G258600--Sobic003G190800 Sobic008G098800 Sobic008G098800 Sobic008G100000--Sobic008G098800 Sobic001G510800 Sobic001G510800 Sobic008G100000--Sobic001G510800 Sobic008G100000--Sobic001G058900 Sobic008G094600 Sobic008G094600 Sobic008G100000--Sobic008G094600 Sobic004G002350 Sobic004G002350 Sobic008G100000--Sobic004G002350 Sobic010G005300 Sobic010G005300 Sobic008G100000--Sobic010G005300 Sobic002G286900 Sobic002G286900 Sobic008G100000--Sobic002G286900 Sobic002G304900 Sobic002G304900 Sobic008G100000--Sobic002G304900 Sobic008G108601 Sobic008G108601 Sobic008G100000--Sobic008G108601
Octagon: transcription factors


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