Gene annotation
Transcriptome id Sobic.004G175700.1
Synonym KIWI, Sb04g022580
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5XU82
Pfam PF02229
Panther DB PTHR13215
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003713transcription coactivator activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09250 : ssDNA-binding transcriptional regulator
RAP-DB (Rice) LOC_Os02g34830.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020636
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G175700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
2 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
3 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
5 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
6 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
7 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
8 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
9 Sobic.001G285300 expressed protein -
10 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
11 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
12 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
13 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
14 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
15 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
16 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
17 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
18 Sobic.006G049700 SAM domain family protein, expressed -
19 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
20 Sobic.009G231900 expressed protein -


Gene co-expression network
sample Sobic004G175700 Sobic004G175700 Sobic001G404100 Sobic001G404100 Sobic004G175700--Sobic001G404100 Sobic003G367900 Sobic003G367900 Sobic004G175700--Sobic003G367900 Sobic008G137600 Sobic008G137600 Sobic004G175700--Sobic008G137600 Sobic002G279000 Sobic002G279000 Sobic004G175700--Sobic002G279000 Sobic007G152400 Sobic007G152400 Sobic004G175700--Sobic007G152400 Sobic001G532100 Sobic001G532100 Sobic004G175700--Sobic001G532100 Sobic006G079900 Sobic006G079900 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic001G285300 Sobic001G285300 Sobic004G175700--Sobic001G285300 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G127700 Sobic003G127700 Sobic003G367900--Sobic003G127700 Sobic002G331300 Sobic002G331300 Sobic003G367900--Sobic002G331300 Sobic003G367900--Sobic004G175700 Sobic009G258600 Sobic009G258600 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic008G137600--Sobic001G532100 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic008G137600--Sobic002G341800 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic001G094500 Sobic001G094500 Sobic002G279000--Sobic001G094500 Sobic004G137900 Sobic004G137900 Sobic002G279000--Sobic004G137900 Sobic001G544100 Sobic001G544100 Sobic002G279000--Sobic001G544100 Sobic006G231700 Sobic006G231700 Sobic002G279000--Sobic006G231700 Sobic002G279000--Sobic001G532100 Sobic003G190800 Sobic003G190800 Sobic002G279000--Sobic003G190800 Sobic004G012800 Sobic004G012800 Sobic002G279000--Sobic004G012800 Sobic002G279000--Sobic007G152400 Sobic002G279000--Sobic004G175700 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic001G532100--Sobic003G273400 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic006G079900--Sobic003G190800 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic001G431700 Sobic001G431700 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic006G079900--Sobic001G404100 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G402300--Sobic001G285300 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G285300--Sobic001G036700 Sobic001G126200 Sobic001G126200 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G285300--Sobic001G402300 Sobic006G094600 Sobic006G094600 Sobic001G285300--Sobic006G094600
Octagon: transcription factors


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