Gene annotation
Transcriptome id Sobic.002G279000.1
Synonym Sb02g031180, PAD2
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5X6V1
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF15
NCBI CDD KOG0183; 20S proteasome, regulatory subunit alpha type PSMA7/PRE6
KEGG Orthology K02731; 20S proteasome subunit alpha 4
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G66140 : proteasome alpha subunit D2
RAP-DB (Rice) LOC_Os08g43540.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a014456 , Zm00025a034216 , Zm00025a049340
Brachypodium KQJ99289 , KQJ91233
Barley HORVU2Hr1G060310.6 , HORVU7Hr1G057390.1 , HORVU7Hr1G057390.2 , HORVU4Hr1G042970.16 , HORVU4Hr1G042970.10 , HORVU6Hr1G051730.1 , HORVU4Hr1G042970.6 , HORVU1Hr1G015690.1 , HORVU1Hr1G015690.2 , HORVU5Hr1G083350.1 , HORVU2Hr1G060310.7 , HORVU2Hr1G060310.4 , HORVU2Hr1G060310.5
Wheat TraesCS5B02G329400 , TraesCS7B02G170000 , TraesCS7D02G272300 , TraesCS7A02G272000 , TraesCS5A02G329300
Populus -


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cDNA sequences
Sobic.002G279000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
3 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
4 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
5 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
6 Sobic.003G190800 GA18326-PA, putative, expressed -
7 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
8 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
9 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
11 Sobic.003G400800 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
12 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.006G276200 F-box domain containing protein, expressed -
14 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
15 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.004G242100 expressed protein -
17 Sobic.001G329300 expressed protein -
18 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
19 Sobic.007G184400 60S ribosomal protein L7, putative, expressed K02937: RP-L7e, large subunit ribosomal protein L7e
20 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I


Gene co-expression network
sample Sobic002G279000 Sobic002G279000 Sobic001G094500 Sobic001G094500 Sobic002G279000--Sobic001G094500 Sobic004G137900 Sobic004G137900 Sobic002G279000--Sobic004G137900 Sobic001G544100 Sobic001G544100 Sobic002G279000--Sobic001G544100 Sobic006G231700 Sobic006G231700 Sobic002G279000--Sobic006G231700 Sobic001G532100 Sobic001G532100 Sobic002G279000--Sobic001G532100 Sobic003G190800 Sobic003G190800 Sobic002G279000--Sobic003G190800 Sobic004G012800 Sobic004G012800 Sobic002G279000--Sobic004G012800 Sobic007G152400 Sobic007G152400 Sobic002G279000--Sobic007G152400 Sobic004G175700 Sobic004G175700 Sobic002G279000--Sobic004G175700 Sobic001G094500--Sobic006G231700 Sobic001G128400 Sobic001G128400 Sobic001G094500--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic001G094500--Sobic005G111100 Sobic004G265700 Sobic004G265700 Sobic001G094500--Sobic004G265700 Sobic001G094500--Sobic002G279000 Sobic001G094500--Sobic001G532100 Sobic001G094500--Sobic007G152400 Sobic001G529000 Sobic001G529000 Sobic001G094500--Sobic001G529000 Sobic007G163700 Sobic007G163700 Sobic001G094500--Sobic007G163700 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic003G358300 Sobic003G358300 Sobic004G137900--Sobic003G358300 Sobic006G013900 Sobic006G013900 Sobic004G137900--Sobic006G013900 Sobic002G331300 Sobic002G331300 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic004G242100 Sobic004G242100 Sobic001G544100--Sobic004G242100 Sobic001G544100--Sobic004G137900 Sobic001G544100--Sobic001G532100 Sobic001G544100--Sobic002G279000 Sobic004G260400 Sobic004G260400 Sobic001G544100--Sobic004G260400 Sobic001G544100--Sobic001G094500 Sobic001G544100--Sobic004G012800 Sobic006G276200 Sobic006G276200 Sobic001G544100--Sobic006G276200 Sobic001G009800 Sobic001G009800 Sobic001G544100--Sobic001G009800 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic006G079900 Sobic006G079900 Sobic003G190800--Sobic006G079900 Sobic009G124400 Sobic009G124400 Sobic003G190800--Sobic009G124400 Sobic009G258600 Sobic009G258600 Sobic003G190800--Sobic009G258600 Sobic003G367900 Sobic003G367900 Sobic003G190800--Sobic003G367900 Sobic003G190800--Sobic002G279000 Sobic005G206700 Sobic005G206700 Sobic003G190800--Sobic005G206700 Sobic003G190800--Sobic006G231700 Sobic003G190800--Sobic004G137900 Sobic001G199300 Sobic001G199300 Sobic003G190800--Sobic001G199300 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic004G012800--Sobic005G111100 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic004G012800--Sobic001G532100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic001G404100 Sobic001G404100 Sobic004G175700--Sobic001G404100 Sobic004G175700--Sobic003G367900 Sobic004G175700--Sobic008G137600 Sobic004G175700--Sobic002G279000 Sobic004G175700--Sobic007G152400 Sobic004G175700--Sobic001G532100 Sobic004G175700--Sobic006G079900 Sobic001G402300 Sobic001G402300 Sobic004G175700--Sobic001G402300 Sobic004G175700--Sobic001G285300
Octagon: transcription factors


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