Gene annotation
Transcriptome id Sobic.004G242100.1
Synonym Sb04g028290
Functional annotation expressed protein
UniProt C5XYW7
Pfam PF09793
Panther DB PTHR13542
NCBI CDD KOG4401; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G24050 : RNA-processing, Lsm domain
RAP-DB (Rice) LOC_Os02g50830.1 : expressed protein
MaizeGDB (Corn) Zm00025a022000 , Zm00025a033219
Brachypodium PNT69651
Barley HORVU6Hr1G076310.1 , HORVU6Hr1G076310.2
Wheat TraesCS6B02G338900 , TraesCS6D02G288600
Populus -


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cDNA sequences
Sobic.004G242100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402600 expressed protein -
2 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
3 Sobic.003G435000 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
4 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
5 Sobic.006G236500 RNA recognition motif containing protein, putative, expressed -
6 Sobic.009G016500 expressed protein -
7 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
8 Sobic.007G037000 serine esterase family protein, putative, expressed -
9 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
10 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
11 Sobic.003G024500 expressed protein -
12 Sobic.007G038800 expressed protein -
13 Sobic.006G143500 expressed protein -
14 Sobic.002G378401 - -
15 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
16 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
17 Sobic.001G285300 expressed protein -
18 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
19 Sobic.001G199300 GIL1, putative, expressed -
20 Sobic.006G276200 F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G242100 Sobic004G242100 Sobic001G402600 Sobic001G402600 Sobic004G242100--Sobic001G402600 Sobic003G031200 Sobic003G031200 Sobic004G242100--Sobic003G031200 Sobic003G435000 Sobic003G435000 Sobic004G242100--Sobic003G435000 Sobic001G544100 Sobic001G544100 Sobic004G242100--Sobic001G544100 Sobic006G236500 Sobic006G236500 Sobic004G242100--Sobic006G236500 Sobic009G016500 Sobic009G016500 Sobic004G242100--Sobic009G016500 Sobic004G012800 Sobic004G012800 Sobic004G242100--Sobic004G012800 Sobic007G037000 Sobic007G037000 Sobic004G242100--Sobic007G037000 Sobic001G434400 Sobic001G434400 Sobic004G242100--Sobic001G434400 Sobic001G402600--Sobic004G242100 Sobic007G192100 Sobic007G192100 Sobic001G402600--Sobic007G192100 Sobic001G126200 Sobic001G126200 Sobic001G402600--Sobic001G126200 Sobic007G092100 Sobic007G092100 Sobic001G402600--Sobic007G092100 Sobic003G358300 Sobic003G358300 Sobic001G402600--Sobic003G358300 Sobic006G143500 Sobic006G143500 Sobic001G402600--Sobic006G143500 Sobic001G285300 Sobic001G285300 Sobic001G402600--Sobic001G285300 Sobic003G224300 Sobic003G224300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300 Sobic003G435000--Sobic004G242100 Sobic003G435000--Sobic009G016500 Sobic001G370700 Sobic001G370700 Sobic003G435000--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic003G435000--Sobic002G308300 Sobic001G347901 Sobic001G347901 Sobic003G435000--Sobic001G347901 Sobic002G180300 Sobic002G180300 Sobic003G435000--Sobic002G180300 Sobic002G260200 Sobic002G260200 Sobic003G435000--Sobic002G260200 Sobic006G231500 Sobic006G231500 Sobic003G435000--Sobic006G231500 Sobic007G013900 Sobic007G013900 Sobic003G435000--Sobic007G013900 Sobic001G544100--Sobic004G242100 Sobic004G137900 Sobic004G137900 Sobic001G544100--Sobic004G137900 Sobic001G532100 Sobic001G532100 Sobic001G544100--Sobic001G532100 Sobic002G279000 Sobic002G279000 Sobic001G544100--Sobic002G279000 Sobic004G260400 Sobic004G260400 Sobic001G544100--Sobic004G260400 Sobic001G094500 Sobic001G094500 Sobic001G544100--Sobic001G094500 Sobic001G544100--Sobic004G012800 Sobic006G276200 Sobic006G276200 Sobic001G544100--Sobic006G276200 Sobic001G009800 Sobic001G009800 Sobic001G544100--Sobic001G009800 Sobic006G236500--Sobic004G242100 Sobic001G116700 Sobic001G116700 Sobic006G236500--Sobic001G116700 Sobic006G236500--Sobic001G402600 Sobic003G368700 Sobic003G368700 Sobic006G236500--Sobic003G368700 Sobic006G236500--Sobic007G037000 Sobic002G353000 Sobic002G353000 Sobic006G236500--Sobic002G353000 Sobic006G150600 Sobic006G150600 Sobic006G236500--Sobic006G150600 Sobic009G220100 Sobic009G220100 Sobic006G236500--Sobic009G220100 Sobic004G272200 Sobic004G272200 Sobic006G236500--Sobic004G272200 Sobic009G016500--Sobic001G347901 Sobic009G016500--Sobic002G308300 Sobic001G286200 Sobic001G286200 Sobic009G016500--Sobic001G286200 Sobic001G473400 Sobic001G473400 Sobic009G016500--Sobic001G473400 Sobic009G016500--Sobic001G370700 Sobic010G264300 Sobic010G264300 Sobic009G016500--Sobic010G264300 Sobic010G258000 Sobic010G258000 Sobic009G016500--Sobic010G258000 Sobic002G078300 Sobic002G078300 Sobic009G016500--Sobic002G078300 Sobic008G136800 Sobic008G136800 Sobic009G016500--Sobic008G136800 Sobic004G012800--Sobic004G137900 Sobic004G012800--Sobic006G231500 Sobic006G231700 Sobic006G231700 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic005G111100 Sobic005G111100 Sobic004G012800--Sobic005G111100 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic004G012800--Sobic001G532100 Sobic007G037000--Sobic004G242100 Sobic007G037000--Sobic001G402600 Sobic007G037000--Sobic006G236500 Sobic007G037000--Sobic001G285300 Sobic007G037000--Sobic007G192100 Sobic007G037000--Sobic003G435000 Sobic003G101300 Sobic003G101300 Sobic007G037000--Sobic003G101300 Sobic004G122000 Sobic004G122000 Sobic007G037000--Sobic004G122000 Sobic007G030700 Sobic007G030700 Sobic007G037000--Sobic007G030700 Sobic001G434400--Sobic006G276200 Sobic001G434400--Sobic010G088300 Sobic001G434400--Sobic004G012800 Sobic001G434400--Sobic006G231500 Sobic001G434400--Sobic004G242100 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G130400 Sobic001G130400 Sobic001G434400--Sobic001G130400 Sobic005G110526 Sobic005G110526 Sobic001G434400--Sobic005G110526
Octagon: transcription factors


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