Gene annotation
Transcriptome id Sobic.006G236500.1
Synonym Sb06g030330
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Y8Z2
Pfam PF00076
Panther DB -
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G14340 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g54870.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009582 , Zm00025a057175
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G236500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G242100 expressed protein -
2 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
3 Sobic.001G402600 expressed protein -
4 Sobic.003G368700 COV1, putative, expressed -
5 Sobic.007G037000 serine esterase family protein, putative, expressed -
6 Sobic.002G353000 5-formyltetrahydrofolate cyclo-ligase, putative, expressed K01934: 5-formyltetrahydrofolate cyclo-ligase
7 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
8 Sobic.009G220100 exostosin family domain containing protein, expressed -
9 Sobic.004G272200 secretory carrier-associated membrane protein, putative, expressed -
10 Sobic.001G090000 expressed protein -
11 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
12 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
13 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
14 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
15 Sobic.003G101300 expressed protein -
16 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
17 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.001G230900 - K07910: Ras-related protein Rab-18
19 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
20 Sobic.004G220400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Lyase(PubMedID : 30367619)@phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase


Gene co-expression network
sample Sobic006G236500 Sobic006G236500 Sobic004G242100 Sobic004G242100 Sobic006G236500--Sobic004G242100 Sobic001G116700 Sobic001G116700 Sobic006G236500--Sobic001G116700 Sobic001G402600 Sobic001G402600 Sobic006G236500--Sobic001G402600 Sobic003G368700 Sobic003G368700 Sobic006G236500--Sobic003G368700 Sobic007G037000 Sobic007G037000 Sobic006G236500--Sobic007G037000 Sobic002G353000 Sobic002G353000 Sobic006G236500--Sobic002G353000 Sobic006G150600 Sobic006G150600 Sobic006G236500--Sobic006G150600 Sobic009G220100 Sobic009G220100 Sobic006G236500--Sobic009G220100 Sobic004G272200 Sobic004G272200 Sobic006G236500--Sobic004G272200 Sobic004G242100--Sobic001G402600 Sobic003G031200 Sobic003G031200 Sobic004G242100--Sobic003G031200 Sobic003G435000 Sobic003G435000 Sobic004G242100--Sobic003G435000 Sobic001G544100 Sobic001G544100 Sobic004G242100--Sobic001G544100 Sobic004G242100--Sobic006G236500 Sobic009G016500 Sobic009G016500 Sobic004G242100--Sobic009G016500 Sobic004G012800 Sobic004G012800 Sobic004G242100--Sobic004G012800 Sobic004G242100--Sobic007G037000 Sobic001G434400 Sobic001G434400 Sobic004G242100--Sobic001G434400 Sobic001G304400 Sobic001G304400 Sobic001G116700--Sobic001G304400 Sobic001G034700 Sobic001G034700 Sobic001G116700--Sobic001G034700 Sobic001G432000 Sobic001G432000 Sobic001G116700--Sobic001G432000 Sobic008G129400 Sobic008G129400 Sobic001G116700--Sobic008G129400 Sobic010G018400 Sobic010G018400 Sobic001G116700--Sobic010G018400 Sobic009G062000 Sobic009G062000 Sobic001G116700--Sobic009G062000 Sobic004G026400 Sobic004G026400 Sobic001G116700--Sobic004G026400 Sobic010G041600 Sobic010G041600 Sobic001G116700--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic001G116700--Sobic003G150000 Sobic001G402600--Sobic004G242100 Sobic007G192100 Sobic007G192100 Sobic001G402600--Sobic007G192100 Sobic001G126200 Sobic001G126200 Sobic001G402600--Sobic001G126200 Sobic007G092100 Sobic007G092100 Sobic001G402600--Sobic007G092100 Sobic003G358300 Sobic003G358300 Sobic001G402600--Sobic003G358300 Sobic006G143500 Sobic006G143500 Sobic001G402600--Sobic006G143500 Sobic001G285300 Sobic001G285300 Sobic001G402600--Sobic001G285300 Sobic003G224300 Sobic003G224300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic004G166500 Sobic004G166500 Sobic003G368700--Sobic004G166500 Sobic003G368700--Sobic009G220100 Sobic001G505500 Sobic001G505500 Sobic003G368700--Sobic001G505500 Sobic008G132700 Sobic008G132700 Sobic003G368700--Sobic008G132700 Sobic003G368700--Sobic003G358300 Sobic003G368700--Sobic006G236500 Sobic002G309400 Sobic002G309400 Sobic003G368700--Sobic002G309400 Sobic010G106200 Sobic010G106200 Sobic003G368700--Sobic010G106200 Sobic010G238700 Sobic010G238700 Sobic003G368700--Sobic010G238700 Sobic007G037000--Sobic004G242100 Sobic007G037000--Sobic001G402600 Sobic007G037000--Sobic006G236500 Sobic007G037000--Sobic001G285300 Sobic007G037000--Sobic007G192100 Sobic007G037000--Sobic003G435000 Sobic003G101300 Sobic003G101300 Sobic007G037000--Sobic003G101300 Sobic004G122000 Sobic004G122000 Sobic007G037000--Sobic004G122000 Sobic007G030700 Sobic007G030700 Sobic007G037000--Sobic007G030700 Sobic002G301400 Sobic002G301400 Sobic002G353000--Sobic002G301400 Sobic001G481700 Sobic001G481700 Sobic002G353000--Sobic001G481700 Sobic007G220900 Sobic007G220900 Sobic002G353000--Sobic007G220900 Sobic004G138800 Sobic004G138800 Sobic002G353000--Sobic004G138800 Sobic004G224900 Sobic004G224900 Sobic002G353000--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic002G353000--Sobic008G132400 Sobic002G406500 Sobic002G406500 Sobic002G353000--Sobic002G406500 Sobic002G353000--Sobic008G132700 Sobic010G042800 Sobic010G042800 Sobic002G353000--Sobic010G042800 Sobic003G124800 Sobic003G124800 Sobic006G150600--Sobic003G124800 Sobic001G294000 Sobic001G294000 Sobic006G150600--Sobic001G294000 Sobic006G150600--Sobic007G030700 Sobic001G529000 Sobic001G529000 Sobic006G150600--Sobic001G529000 Sobic009G198500 Sobic009G198500 Sobic006G150600--Sobic009G198500 Sobic003G329800 Sobic003G329800 Sobic006G150600--Sobic003G329800 Sobic008G058300 Sobic008G058300 Sobic006G150600--Sobic008G058300 Sobic003G362400 Sobic003G362400 Sobic006G150600--Sobic003G362400 Sobic008G132800 Sobic008G132800 Sobic006G150600--Sobic008G132800 Sobic010G238800 Sobic010G238800 Sobic009G220100--Sobic010G238800 Sobic003G410800 Sobic003G410800 Sobic009G220100--Sobic003G410800 Sobic001G418100 Sobic001G418100 Sobic009G220100--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic009G220100--Sobic009G181800 Sobic003G219800 Sobic003G219800 Sobic009G220100--Sobic003G219800 Sobic001G409100 Sobic001G409100 Sobic009G220100--Sobic001G409100 Sobic002G396400 Sobic002G396400 Sobic009G220100--Sobic002G396400 Sobic004G221300 Sobic004G221300 Sobic009G220100--Sobic004G221300 Sobic002G128800 Sobic002G128800 Sobic009G220100--Sobic002G128800 Sobic008G103700 Sobic008G103700 Sobic004G272200--Sobic008G103700 Sobic002G252000 Sobic002G252000 Sobic004G272200--Sobic002G252000 Sobic001G007600 Sobic001G007600 Sobic004G272200--Sobic001G007600 Sobic004G272200--Sobic010G238800 Sobic006G156000 Sobic006G156000 Sobic004G272200--Sobic006G156000 Sobic004G272200--Sobic004G138800 Sobic004G272200--Sobic002G128800 Sobic004G272200--Sobic006G236500 Sobic001G096100 Sobic001G096100 Sobic004G272200--Sobic001G096100
Octagon: transcription factors


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