Gene annotation
Transcriptome id Sobic.004G272200.1,Sobic.004G272200.2
Synonym Sb04g030960
Functional annotation secretory carrier-associated membrane protein, putative, expressed
UniProt A0A194YSZ3 , A0A194YRT9
Pfam PF04144
Panther DB PTHR10687 PTHR10687:SF23
NCBI CDD KOG3088; Secretory carrier membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT1G32050 : SCAMP family protein
RAP-DB (Rice) LOC_Os04g50890.1 : secretory carrier-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a021648 , Zm00025a056917
Brachypodium KQK00877 , KQJ84348 , KQK00876 , KQK15733
Barley HORVU6Hr1G067670.8 , HORVU6Hr1G067670.9 , HORVU6Hr1G067670.1 , HORVU6Hr1G067670.2 , HORVU6Hr1G067670.3 , HORVU6Hr1G067670.4 , HORVU6Hr1G067670.5 , HORVU6Hr1G067670.6 , HORVU6Hr1G067670.7 , HORVU2Hr1G102780.6 , HORVU2Hr1G102780.7 , HORVU2Hr1G102780.2 , HORVU2Hr1G102780.3 , HORVU2Hr1G102780.1 , HORVU2Hr1G102780.8 , HORVU2Hr1G102780.9 , HORVU6Hr1G067670.12 , HORVU6Hr1G067670.13 , HORVU6Hr1G067670.10 , HORVU6Hr1G067670.11
Wheat TraesCS6D02G247500 , TraesCS2B02G465100 , TraesCS2A02G443900 , TraesCS6A02G267200 , TraesCS6A02G267200 , TraesCS6B02G294600 , TraesCS2D02G443100 , TraesCS2D02G443100 , TraesCS2D02G443100
Populus -


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cDNA sequences
Sobic.004G272200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G103700 nitrilase-associated protein, putative, expressed K18635: protein SPIRAL1 and related proteins
2 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
3 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
4 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
6 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
7 Sobic.002G128800 fiber protein Fb34, putative, expressed -
8 Sobic.006G236500 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
10 Sobic.009G220100 exostosin family domain containing protein, expressed -
11 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
12 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
13 Sobic.002G353000 5-formyltetrahydrofolate cyclo-ligase, putative, expressed K01934: 5-formyltetrahydrofolate cyclo-ligase
14 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
15 Sobic.003G368700 COV1, putative, expressed -
16 Sobic.001G512000 cyclin-dependent kinase inhibitor, putative, expressed -
17 Sobic.001G304400 expressed protein -
18 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
19 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
20 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e


Gene co-expression network
sample Sobic004G272200 Sobic004G272200 Sobic008G103700 Sobic008G103700 Sobic004G272200--Sobic008G103700 Sobic002G252000 Sobic002G252000 Sobic004G272200--Sobic002G252000 Sobic001G007600 Sobic001G007600 Sobic004G272200--Sobic001G007600 Sobic010G238800 Sobic010G238800 Sobic004G272200--Sobic010G238800 Sobic006G156000 Sobic006G156000 Sobic004G272200--Sobic006G156000 Sobic004G138800 Sobic004G138800 Sobic004G272200--Sobic004G138800 Sobic002G128800 Sobic002G128800 Sobic004G272200--Sobic002G128800 Sobic006G236500 Sobic006G236500 Sobic004G272200--Sobic006G236500 Sobic001G096100 Sobic001G096100 Sobic004G272200--Sobic001G096100 Sobic004G024300 Sobic004G024300 Sobic008G103700--Sobic004G024300 Sobic001G034700 Sobic001G034700 Sobic008G103700--Sobic001G034700 Sobic008G103700--Sobic010G238800 Sobic003G306100 Sobic003G306100 Sobic008G103700--Sobic003G306100 Sobic003G344600 Sobic003G344600 Sobic008G103700--Sobic003G344600 Sobic003G443300 Sobic003G443300 Sobic008G103700--Sobic003G443300 Sobic002G335300 Sobic002G335300 Sobic008G103700--Sobic002G335300 Sobic008G103700--Sobic002G128800 Sobic001G432000 Sobic001G432000 Sobic008G103700--Sobic001G432000 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic001G418100 Sobic001G418100 Sobic002G252000--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G252000--Sobic002G396400 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic009G182300 Sobic009G182300 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300 Sobic009G220100 Sobic009G220100 Sobic010G238800--Sobic009G220100 Sobic010G238800--Sobic006G156000 Sobic010G052200 Sobic010G052200 Sobic010G238800--Sobic010G052200 Sobic010G238800--Sobic003G344600 Sobic010G238800--Sobic008G103700 Sobic010G238800--Sobic003G443300 Sobic010G238800--Sobic002G128800 Sobic005G168100 Sobic005G168100 Sobic010G238800--Sobic005G168100 Sobic001G084100 Sobic001G084100 Sobic010G238800--Sobic001G084100 Sobic006G156000--Sobic003G443300 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic004G138800--Sobic001G007600 Sobic004G138800--Sobic006G252200 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic002G128800--Sobic001G418100 Sobic002G128800--Sobic002G396400 Sobic001G475500 Sobic001G475500 Sobic002G128800--Sobic001G475500 Sobic002G128800--Sobic010G052200 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic002G128800--Sobic003G443300 Sobic004G242100 Sobic004G242100 Sobic006G236500--Sobic004G242100 Sobic001G116700 Sobic001G116700 Sobic006G236500--Sobic001G116700 Sobic001G402600 Sobic001G402600 Sobic006G236500--Sobic001G402600 Sobic003G368700 Sobic003G368700 Sobic006G236500--Sobic003G368700 Sobic007G037000 Sobic007G037000 Sobic006G236500--Sobic007G037000 Sobic002G353000 Sobic002G353000 Sobic006G236500--Sobic002G353000 Sobic006G150600 Sobic006G150600 Sobic006G236500--Sobic006G150600 Sobic006G236500--Sobic009G220100 Sobic006G236500--Sobic004G272200 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700
Octagon: transcription factors


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