Gene annotation
Transcriptome id Sobic.003G368700.1
Synonym LCV2, Sb03g041010
Functional annotation COV1, putative, expressed
UniProt C5XQN6
Pfam PF04367
Panther DB PTHR31876 PTHR31876:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43130 : like COV 2
RAP-DB (Rice) LOC_Os01g64780.2 : COV1, putative, expressed
MaizeGDB (Corn) Zm00025a026696 , Zm00025a043847 , Zm00025a039558 , Zm00025a037298
Brachypodium KQK10779 , KQK10780
Barley HORVU1Hr1G075030.6 , HORVU1Hr1G075030.7 , HORVU1Hr1G075030.4 , HORVU1Hr1G075030.5 , HORVU1Hr1G075030.2 , HORVU1Hr1G075030.3 , HORVU1Hr1G075030.1 , HORVU1Hr1G075030.8 , HORVU3Hr1G083110.3 , HORVU3Hr1G083110.1 , HORVU3Hr1G083110.6 , HORVU3Hr1G083110.7 , HORVU3Hr1G083110.4 , HORVU1Hr1G075030.9 , HORVU1Hr1G075030.10
Wheat TraesCS1A02G272400 , TraesCS3B02G412400 , TraesCS3A02G379800 , TraesCS3D02G372800 , TraesCS3D02G372800 , TraesCS1D02G272500 , TraesCS1B02G282400
Populus -


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cDNA sequences
Sobic.003G368700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
2 Sobic.009G220100 exostosin family domain containing protein, expressed -
3 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
4 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
5 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
6 Sobic.006G236500 RNA recognition motif containing protein, putative, expressed -
7 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
8 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
9 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
10 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
11 Sobic.001G402600 expressed protein -
12 Sobic.008G130400 prefoldin, putative, expressed -
13 Sobic.004G069200 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
15 Sobic.001G090000 expressed protein -
16 Sobic.004G272200 secretory carrier-associated membrane protein, putative, expressed -
17 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
18 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
19 Sobic.009G182300 - -
20 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5


Gene co-expression network
sample Sobic003G368700 Sobic003G368700 Sobic004G166500 Sobic004G166500 Sobic003G368700--Sobic004G166500 Sobic009G220100 Sobic009G220100 Sobic003G368700--Sobic009G220100 Sobic001G505500 Sobic001G505500 Sobic003G368700--Sobic001G505500 Sobic008G132700 Sobic008G132700 Sobic003G368700--Sobic008G132700 Sobic003G358300 Sobic003G358300 Sobic003G368700--Sobic003G358300 Sobic006G236500 Sobic006G236500 Sobic003G368700--Sobic006G236500 Sobic002G309400 Sobic002G309400 Sobic003G368700--Sobic002G309400 Sobic010G106200 Sobic010G106200 Sobic003G368700--Sobic010G106200 Sobic010G238700 Sobic010G238700 Sobic003G368700--Sobic010G238700 Sobic004G166500--Sobic003G358300 Sobic001G201100 Sobic001G201100 Sobic004G166500--Sobic001G201100 Sobic001G066700 Sobic001G066700 Sobic004G166500--Sobic001G066700 Sobic004G166500--Sobic003G368700 Sobic008G130400 Sobic008G130400 Sobic004G166500--Sobic008G130400 Sobic002G218000 Sobic002G218000 Sobic004G166500--Sobic002G218000 Sobic006G239300 Sobic006G239300 Sobic004G166500--Sobic006G239300 Sobic004G166500--Sobic001G505500 Sobic009G070200 Sobic009G070200 Sobic004G166500--Sobic009G070200 Sobic010G238800 Sobic010G238800 Sobic009G220100--Sobic010G238800 Sobic003G410800 Sobic003G410800 Sobic009G220100--Sobic003G410800 Sobic001G418100 Sobic001G418100 Sobic009G220100--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic009G220100--Sobic009G181800 Sobic003G219800 Sobic003G219800 Sobic009G220100--Sobic003G219800 Sobic001G409100 Sobic001G409100 Sobic009G220100--Sobic001G409100 Sobic002G396400 Sobic002G396400 Sobic009G220100--Sobic002G396400 Sobic004G221300 Sobic004G221300 Sobic009G220100--Sobic004G221300 Sobic002G128800 Sobic002G128800 Sobic009G220100--Sobic002G128800 Sobic004G138800 Sobic004G138800 Sobic001G505500--Sobic004G138800 Sobic001G418900 Sobic001G418900 Sobic001G505500--Sobic001G418900 Sobic007G115100 Sobic007G115100 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G334300 Sobic001G334300 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500 Sobic006G216600 Sobic006G216600 Sobic008G132700--Sobic006G216600 Sobic002G406500 Sobic002G406500 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic008G132700--Sobic001G085400 Sobic008G132700--Sobic001G418900 Sobic006G138100 Sobic006G138100 Sobic008G132700--Sobic006G138100 Sobic002G049300 Sobic002G049300 Sobic008G132700--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic004G242100 Sobic004G242100 Sobic006G236500--Sobic004G242100 Sobic001G116700 Sobic001G116700 Sobic006G236500--Sobic001G116700 Sobic001G402600 Sobic001G402600 Sobic006G236500--Sobic001G402600 Sobic006G236500--Sobic003G368700 Sobic007G037000 Sobic007G037000 Sobic006G236500--Sobic007G037000 Sobic002G353000 Sobic002G353000 Sobic006G236500--Sobic002G353000 Sobic006G150600 Sobic006G150600 Sobic006G236500--Sobic006G150600 Sobic006G236500--Sobic009G220100 Sobic004G272200 Sobic004G272200 Sobic006G236500--Sobic004G272200 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic001G084900 Sobic001G084900 Sobic010G106200--Sobic001G084900 Sobic001G175300 Sobic001G175300 Sobic010G106200--Sobic001G175300 Sobic001G403500 Sobic001G403500 Sobic010G106200--Sobic001G403500 Sobic010G106200--Sobic002G049300 Sobic007G190800 Sobic007G190800 Sobic010G106200--Sobic007G190800 Sobic010G204500 Sobic010G204500 Sobic010G106200--Sobic010G204500 Sobic009G022400 Sobic009G022400 Sobic010G106200--Sobic009G022400 Sobic010G106200--Sobic001G377800 Sobic002G286900 Sobic002G286900 Sobic010G106200--Sobic002G286900 Sobic006G222400 Sobic006G222400 Sobic010G238700--Sobic006G222400 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700
Octagon: transcription factors


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