Gene annotation
Transcriptome id Sobic.008G132700.1
Synonym ACLA-3, Sb08g018480
Functional annotation ATP-grasp domain containing protein, expressed
UniProt C5YPW0
Pfam PF08442 PF16114
Panther DB PTHR23118
NCBI CDD -
KEGG Orthology K01648; ATP citrate (pro-S)-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09430 : ATP-citrate lyase A-3
RAP-DB (Rice) LOC_Os12g37870.1 : ATP-grasp domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029109 , Zm00025a025456
Brachypodium KQJ86270 , KQJ87203
Barley HORVU5Hr1G022100.10 , HORVU5Hr1G022100.11 , HORVU5Hr1G022100.6 , HORVU5Hr1G022100.7 , HORVU5Hr1G022100.4 , HORVU5Hr1G022100.5 , HORVU5Hr1G022100.2 , HORVU5Hr1G022100.3 , HORVU5Hr1G022100.1 , HORVU5Hr1G022100.8 , HORVU5Hr1G022100.9 , HORVU5Hr1G013770.1 , HORVU4Hr1G028600.6 , HORVU4Hr1G028600.4 , HORVU4Hr1G028600.5 , HORVU4Hr1G028600.2 , HORVU4Hr1G028600.3 , HORVU4Hr1G028600.1
Wheat TraesCS4B02G144000 , TraesCS4B02G144000 , TraesCS4B02G144000 , TraesCS4A02G172800 , TraesCS4A02G172800 , TraesCS4D02G142600 , TraesCS4D02G142600 , TraesCS4D02G142600 , TraesCS5D02G097100 , TraesCS5D02G097100 , TraesCS5B02G090600 , TraesCS5A02G084700
Populus -


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cDNA sequences
Sobic.008G132700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
2 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
3 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
4 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
5 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
7 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
8 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
10 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
11 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
12 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
13 Sobic.008G130400 prefoldin, putative, expressed -
14 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
15 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
16 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
17 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
18 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
19 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
20 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1


Gene co-expression network
sample Sobic008G132700 Sobic008G132700 Sobic006G216600 Sobic006G216600 Sobic008G132700--Sobic006G216600 Sobic002G406500 Sobic002G406500 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic008G132700--Sobic001G085400 Sobic001G418900 Sobic001G418900 Sobic008G132700--Sobic001G418900 Sobic006G138100 Sobic006G138100 Sobic008G132700--Sobic006G138100 Sobic002G049300 Sobic002G049300 Sobic008G132700--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100 Sobic006G216600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic002G406500--Sobic006G138100 Sobic002G406500--Sobic002G115000 Sobic002G406500--Sobic002G049300 Sobic002G406500--Sobic002G047600 Sobic002G406500--Sobic002G304900 Sobic010G204500 Sobic010G204500 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic001G085400--Sobic002G406500 Sobic007G115100 Sobic007G115100 Sobic001G418900--Sobic007G115100 Sobic003G443300 Sobic003G443300 Sobic001G418900--Sobic003G443300 Sobic004G138800 Sobic004G138800 Sobic001G418900--Sobic004G138800 Sobic004G310300 Sobic004G310300 Sobic001G418900--Sobic004G310300 Sobic002G257300 Sobic002G257300 Sobic001G418900--Sobic002G257300 Sobic009G119900 Sobic009G119900 Sobic001G418900--Sobic009G119900 Sobic003G155400 Sobic003G155400 Sobic001G418900--Sobic003G155400 Sobic005G188100 Sobic005G188100 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800 Sobic006G138100--Sobic001G436200 Sobic006G138100--Sobic002G047600 Sobic006G138100--Sobic002G379500 Sobic007G019000 Sobic007G019000 Sobic006G138100--Sobic007G019000 Sobic006G138100--Sobic006G137100 Sobic004G008400 Sobic004G008400 Sobic006G138100--Sobic004G008400 Sobic006G138100--Sobic003G109600 Sobic009G050300 Sobic009G050300 Sobic006G138100--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic006G138100--Sobic006G116700 Sobic002G049300--Sobic001G085400 Sobic002G049300--Sobic007G178600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic001G377800--Sobic002G049300 Sobic001G377800--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic006G137100--Sobic002G047600
Octagon: transcription factors


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