Gene annotation
Transcriptome id Sobic.002G309400.1
Synonym Sb02g033920, NAD-ME1
Functional annotation - (PubMedID : 26976818)
NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
UniProt A0A1B6QED9
Pfam PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF2
NCBI CDD -
KEGG Orthology K00028; malate dehydrogenase (decarboxylating)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT2G13560 : NAD-dependent malic enzyme 1
RAP-DB (Rice) LOC_Os07g31380.1 : NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048119
Brachypodium KQK16141
Barley HORVU2Hr1G050980.4 , HORVU2Hr1G050980.6 , HORVU2Hr1G050980.2 , HORVU2Hr1G050980.5 , HORVU2Hr1G050980.7 , HORVU2Hr1G050980.1 , HORVU2Hr1G050980.3 , HORVU2Hr1G050980.8
Wheat TraesCS2D02G234500 , TraesCS2D02G234500 , TraesCS2D02G234500 , TraesCS2B02G256800 , TraesCS2A02G237000 , TraesCS4A02G135300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
2 Sobic.001G331900 expressed protein -
3 Sobic.005G092800 expressed protein -
4 Sobic.008G130400 prefoldin, putative, expressed -
5 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
6 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
7 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
8 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
9 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
10 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
11 Sobic.001G237500 transporter family protein, putative, expressed -
12 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
13 Sobic.005G176000 zinc finger family protein, putative, expressed -
14 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
15 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
16 Sobic.008G132800 expressed protein -
17 Sobic.004G001000 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
18 Sobic.009G126500 methyltransferase, putative, expressed -
19 Sobic.007G045600 MSP domain containing protein, expressed -
20 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3


Gene co-expression network
sample Sobic002G309400 Sobic002G309400 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic006G150600 Sobic006G150600 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic007G115100 Sobic007G115100 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic001G529000--Sobic003G124800 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic001G331900--Sobic008G058300 Sobic002G078400 Sobic002G078400 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G377800 Sobic001G377800 Sobic001G331900--Sobic001G377800 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000 Sobic001G019900 Sobic001G019900 Sobic005G092800--Sobic001G019900 Sobic003G321700 Sobic003G321700 Sobic005G092800--Sobic003G321700 Sobic005G092800--Sobic004G107600 Sobic001G445800 Sobic001G445800 Sobic005G092800--Sobic001G445800 Sobic010G213400 Sobic010G213400 Sobic005G092800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic005G092800--Sobic003G249800 Sobic005G092800--Sobic005G157200 Sobic005G092800--Sobic003G362400 Sobic009G094450 Sobic009G094450 Sobic005G092800--Sobic009G094450 Sobic002G263800 Sobic002G263800 Sobic008G130400--Sobic002G263800 Sobic009G232000 Sobic009G232000 Sobic008G130400--Sobic009G232000 Sobic008G132700 Sobic008G132700 Sobic008G130400--Sobic008G132700 Sobic001G513500 Sobic001G513500 Sobic008G130400--Sobic001G513500 Sobic001G418900 Sobic001G418900 Sobic008G130400--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic008G130400--Sobic001G483100 Sobic004G310300 Sobic004G310300 Sobic008G130400--Sobic004G310300 Sobic006G138100 Sobic006G138100 Sobic008G130400--Sobic006G138100 Sobic004G224900 Sobic004G224900 Sobic008G130400--Sobic004G224900 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic006G150600--Sobic003G124800 Sobic001G294000 Sobic001G294000 Sobic006G150600--Sobic001G294000 Sobic007G030700 Sobic007G030700 Sobic006G150600--Sobic007G030700 Sobic006G150600--Sobic001G529000 Sobic006G150600--Sobic009G198500 Sobic003G329800 Sobic003G329800 Sobic006G150600--Sobic003G329800 Sobic006G150600--Sobic008G058300 Sobic006G150600--Sobic003G362400 Sobic006G150600--Sobic008G132800 Sobic003G362400--Sobic002G078400 Sobic003G362400--Sobic004G107600 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic003G362400--Sobic009G232000 Sobic007G115100--Sobic001G418900 Sobic004G269700 Sobic004G269700 Sobic007G115100--Sobic004G269700 Sobic003G155400 Sobic003G155400 Sobic007G115100--Sobic003G155400 Sobic001G505500 Sobic001G505500 Sobic007G115100--Sobic001G505500 Sobic010G153100 Sobic010G153100 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic010G023800 Sobic010G023800 Sobic007G115100--Sobic010G023800 Sobic010G154700 Sobic010G154700 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic004G107600--Sobic001G331900 Sobic004G107600--Sobic003G362400 Sobic004G107600--Sobic001G377800 Sobic010G182600 Sobic010G182600 Sobic004G107600--Sobic010G182600 Sobic004G107600--Sobic005G092800 Sobic004G107600--Sobic005G157200 Sobic004G107600--Sobic002G078400 Sobic004G107600--Sobic003G321700 Sobic004G107600--Sobic001G445800
Octagon: transcription factors


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