Gene annotation
Transcriptome id Sobic.004G001000.1
Synonym Sb04g000290
Functional annotation transmembrane amino acid transporter protein, putative, expressed
UniProt C5XRG7
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF240
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology K15015; SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G39130 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os02g01100.3 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a053651 , Zm00025a035117
Brachypodium PNT65651
Barley HORVU6Hr1G001480.11 , HORVU6Hr1G001480.10 , HORVU6Hr1G001480.5 , HORVU6Hr1G001480.9 , HORVU6Hr1G001480.8 , HORVU6Hr1G001480.7 , HORVU6Hr1G001480.6 , HORVU6Hr1G001480.4 , HORVU6Hr1G001480.3 , HORVU6Hr1G001480.2 , HORVU6Hr1G001480.1
Wheat TraesCS6D02G003200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G233100 expressed protein -
2 Sobic.005G043000 heat shock protein-related, putative, expressed -
3 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
4 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.006G125100 ubiquitin family protein, putative, expressed -
6 Sobic.010G151200 GRF zinc finger family protein, expressed -
7 Sobic.002G320800 expressed protein -
8 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
9 Sobic.010G110800 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.001G147900 cytochrome P450, putative, expressed -
11 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
12 Sobic.007G030700 transporter, putative, expressed -
13 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
14 Sobic.003G280400 hexokinase, putative, expressed K00844: hexokinase
15 Sobic.005G084600 ARGOS, putative, expressed -
16 Sobic.010G272300 cysteine-rich receptor-like protein kinase 28 precursor, putative, expressed -
17 Sobic.002G196100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.009G117000 expressed protein -
19 Sobic.003G184100 auxin-induced protein 5NG4, putative, expressed -
20 Sobic.010G160900 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G001000 Sobic004G001000 Sobic002G233100 Sobic002G233100 Sobic004G001000--Sobic002G233100 Sobic005G043000 Sobic005G043000 Sobic004G001000--Sobic005G043000 Sobic008G128900 Sobic008G128900 Sobic004G001000--Sobic008G128900 Sobic002G312900 Sobic002G312900 Sobic004G001000--Sobic002G312900 Sobic006G125100 Sobic006G125100 Sobic004G001000--Sobic006G125100 Sobic010G151200 Sobic010G151200 Sobic004G001000--Sobic010G151200 Sobic002G320800 Sobic002G320800 Sobic004G001000--Sobic002G320800 Sobic007G161400 Sobic007G161400 Sobic004G001000--Sobic007G161400 Sobic010G110800 Sobic010G110800 Sobic004G001000--Sobic010G110800 Sobic002G233100--Sobic004G001000 Sobic003G366600 Sobic003G366600 Sobic002G233100--Sobic003G366600 Sobic003G184100 Sobic003G184100 Sobic002G233100--Sobic003G184100 Sobic002G233100--Sobic002G312900 Sobic002G233100--Sobic005G043000 Sobic002G196100 Sobic002G196100 Sobic002G233100--Sobic002G196100 Sobic003G404600 Sobic003G404600 Sobic002G233100--Sobic003G404600 Sobic002G233100--Sobic007G161400 Sobic006G059700 Sobic006G059700 Sobic002G233100--Sobic006G059700 Sobic005G043000--Sobic002G312900 Sobic010G272300 Sobic010G272300 Sobic005G043000--Sobic010G272300 Sobic005G043000--Sobic006G059700 Sobic005G043000--Sobic007G161400 Sobic005G043000--Sobic002G196100 Sobic001G147900 Sobic001G147900 Sobic005G043000--Sobic001G147900 Sobic001G082600 Sobic001G082600 Sobic005G043000--Sobic001G082600 Sobic005G043000--Sobic008G128900 Sobic005G043000--Sobic003G366600 Sobic008G128900--Sobic002G312900 Sobic008G128900--Sobic007G161400 Sobic003G416300 Sobic003G416300 Sobic008G128900--Sobic003G416300 Sobic001G494000 Sobic001G494000 Sobic008G128900--Sobic001G494000 Sobic008G128900--Sobic005G043000 Sobic007G127100 Sobic007G127100 Sobic008G128900--Sobic007G127100 Sobic003G363800 Sobic003G363800 Sobic008G128900--Sobic003G363800 Sobic010G195500 Sobic010G195500 Sobic008G128900--Sobic010G195500 Sobic003G280400 Sobic003G280400 Sobic008G128900--Sobic003G280400 Sobic004G176600 Sobic004G176600 Sobic002G312900--Sobic004G176600 Sobic002G312900--Sobic008G128900 Sobic002G312900--Sobic010G195500 Sobic002G312900--Sobic005G043000 Sobic002G312900--Sobic003G416300 Sobic002G312900--Sobic006G059700 Sobic002G312900--Sobic003G366600 Sobic002G312900--Sobic001G147900 Sobic005G084600 Sobic005G084600 Sobic002G312900--Sobic005G084600 Sobic001G503100 Sobic001G503100 Sobic006G125100--Sobic001G503100 Sobic010G063000 Sobic010G063000 Sobic006G125100--Sobic010G063000 Sobic002G247600 Sobic002G247600 Sobic006G125100--Sobic002G247600 Sobic002G125700 Sobic002G125700 Sobic006G125100--Sobic002G125700 Sobic010G185000 Sobic010G185000 Sobic006G125100--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic006G125100--Sobic004G348400 Sobic001G333400 Sobic001G333400 Sobic006G125100--Sobic001G333400 Sobic003G255500 Sobic003G255500 Sobic006G125100--Sobic003G255500 Sobic006G277600 Sobic006G277600 Sobic006G125100--Sobic006G277600 Sobic003G015300 Sobic003G015300 Sobic010G151200--Sobic003G015300 Sobic007G165400 Sobic007G165400 Sobic010G151200--Sobic007G165400 Sobic004G126700 Sobic004G126700 Sobic010G151200--Sobic004G126700 Sobic010G151200--Sobic005G043000 Sobic010G151200--Sobic010G110800 Sobic001G108000 Sobic001G108000 Sobic010G151200--Sobic001G108000 Sobic007G170300 Sobic007G170300 Sobic010G151200--Sobic007G170300 Sobic002G185800 Sobic002G185800 Sobic010G151200--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic010G151200--Sobic005G046700 Sobic003G219800 Sobic003G219800 Sobic002G320800--Sobic003G219800 Sobic001G016500 Sobic001G016500 Sobic002G320800--Sobic001G016500 Sobic006G156000 Sobic006G156000 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic003G109600 Sobic003G109600 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic004G062500 Sobic004G062500 Sobic002G320800--Sobic004G062500 Sobic007G161400--Sobic003G280400 Sobic007G161400--Sobic008G128900 Sobic007G161400--Sobic006G059700 Sobic004G042000 Sobic004G042000 Sobic007G161400--Sobic004G042000 Sobic007G161400--Sobic005G043000 Sobic007G078100 Sobic007G078100 Sobic007G161400--Sobic007G078100 Sobic007G161400--Sobic002G312900 Sobic007G161400--Sobic003G363800 Sobic004G051700 Sobic004G051700 Sobic007G161400--Sobic004G051700 Sobic010G110800--Sobic003G015300 Sobic002G001700 Sobic002G001700 Sobic010G110800--Sobic002G001700 Sobic010G110800--Sobic010G272300 Sobic005G065900 Sobic005G065900 Sobic010G110800--Sobic005G065900 Sobic010G110800--Sobic003G280400 Sobic006G256900 Sobic006G256900 Sobic010G110800--Sobic006G256900 Sobic006G197100 Sobic006G197100 Sobic010G110800--Sobic006G197100 Sobic010G110800--Sobic006G125100 Sobic010G110800--Sobic002G185800
Octagon: transcription factors


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