Gene annotation
Transcriptome id Sobic.002G320800.1
Synonym Sb02g034900
Functional annotation expressed protein
UniProt A0A1W0W6Q6
Pfam -
Panther DB PTHR36405 PTHR36405:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54850 : -
RAP-DB (Rice) LOC_Os07g33650.3 : expressed protein
MaizeGDB (Corn) Zm00025a048233
Brachypodium -
Barley HORVU2Hr1G045630.4 , HORVU2Hr1G045630.1 , HORVU2Hr1G045630.2 , HORVU2Hr1G045630.3
Wheat -
Populus -


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cDNA sequences
Sobic.002G320800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G219800 transferase family protein, putative, expressed -
2 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
3 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
4 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
5 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
6 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
7 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
8 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
9 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
10 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
11 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
12 Sobic.003G343900 expressed protein -
13 Sobic.004G051700 OTU-like cysteine protease family protein, putative, expressed K13719: OTU1, ubiquitin thioesterase OTU1
14 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
15 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
16 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
17 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
18 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
19 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
20 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae


Gene co-expression network
sample Sobic002G320800 Sobic002G320800 Sobic003G219800 Sobic003G219800 Sobic002G320800--Sobic003G219800 Sobic001G016500 Sobic001G016500 Sobic002G320800--Sobic001G016500 Sobic006G156000 Sobic006G156000 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic003G109600 Sobic003G109600 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic004G062500 Sobic004G062500 Sobic002G320800--Sobic004G062500 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic009G050300 Sobic009G050300 Sobic001G016500--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic001G016500--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic001G016500--Sobic002G081600 Sobic002G379500 Sobic002G379500 Sobic001G016500--Sobic002G379500 Sobic003G346600 Sobic003G346600 Sobic001G016500--Sobic003G346600 Sobic001G018900 Sobic001G018900 Sobic001G016500--Sobic001G018900 Sobic001G016400 Sobic001G016400 Sobic001G016500--Sobic001G016400 Sobic004G008400 Sobic004G008400 Sobic001G016500--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic001G016500--Sobic007G197800 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic006G156000--Sobic001G040100 Sobic003G037800 Sobic003G037800 Sobic003G429000--Sobic003G037800 Sobic005G018700 Sobic005G018700 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic001G389000 Sobic001G389000 Sobic003G429000--Sobic001G389000 Sobic002G329000 Sobic002G329000 Sobic003G429000--Sobic002G329000 Sobic002G245100 Sobic002G245100 Sobic003G429000--Sobic002G245100 Sobic009G159400 Sobic009G159400 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G249700 Sobic003G249700 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G109600--Sobic003G436700 Sobic002G047600--Sobic007G019400 Sobic006G137100 Sobic006G137100 Sobic002G047600--Sobic006G137100 Sobic002G047600--Sobic003G249700 Sobic001G085400 Sobic001G085400 Sobic002G047600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic002G047600--Sobic003G387900 Sobic001G436200 Sobic001G436200 Sobic002G047600--Sobic001G436200 Sobic007G178600 Sobic007G178600 Sobic002G047600--Sobic007G178600 Sobic002G047600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic002G047600--Sobic008G108601 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic010G251600 Sobic010G251600 Sobic003G436700--Sobic010G251600 Sobic006G067800 Sobic006G067800 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic003G436700--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic003G436700--Sobic009G215200 Sobic003G436700--Sobic002G379500 Sobic010G252500 Sobic010G252500 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G212300 Sobic004G212300 Sobic004G062500--Sobic004G212300 Sobic007G218800 Sobic007G218800 Sobic004G062500--Sobic007G218800 Sobic010G085800 Sobic010G085800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic004G062500--Sobic003G219800
Octagon: transcription factors


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