Gene annotation
Transcriptome id Sobic.004G054300.1
Synonym Sb04g004610
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OTU-like cysteine protease family protein, putative, expressed
UniProt C5XW28
Pfam PF02338
Panther DB PTHR12419 PTHR12419:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22260 : Cysteine proteinases superfamily protein
RAP-DB (Rice) LOC_Os02g07210.2 : OTU-like cysteine protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019070
Brachypodium PNT65976 , KQJ93525 , KQJ93526
Barley HORVU5Hr1G049220.37 , HORVU5Hr1G049220.38 , HORVU5Hr1G049220.39 , HORVU5Hr1G049220.4 , HORVU5Hr1G049220.7 , HORVU5Hr1G049220.1 , HORVU5Hr1G049220.16 , HORVU5Hr1G049220.17 , HORVU5Hr1G049220.12 , HORVU5Hr1G049220.13 , HORVU5Hr1G049220.10 , HORVU6Hr1G027970.3 , HORVU6Hr1G027970.2 , HORVU6Hr1G027970.1 , HORVU6Hr1G027970.7 , HORVU6Hr1G027970.6 , HORVU6Hr1G027970.5 , HORVU6Hr1G027970.4 , HORVU6Hr1G027970.9 , HORVU6Hr1G027970.8 , HORVU7Hr1G107720.8 , HORVU7Hr1G107720.9 , HORVU7Hr1G107720.6 , HORVU7Hr1G107720.7 , HORVU7Hr1G107720.4 , HORVU7Hr1G107720.5 , HORVU7Hr1G107720.2 , HORVU7Hr1G107720.3 , HORVU7Hr1G107720.1 , HORVU7Hr1G107720.10 , HORVU7Hr1G107720.11 , HORVU7Hr1G107720.12 , HORVU7Hr1G107720.13 , HORVU6Hr1G027970.13 , HORVU6Hr1G027970.12 , HORVU6Hr1G027970.11 , HORVU6Hr1G027970.10 , HORVU6Hr1G027970.16 , HORVU6Hr1G027970.15 , HORVU6Hr1G027970.14 , HORVU5Hr1G049220.27 , HORVU5Hr1G049220.25 , HORVU5Hr1G049220.24 , HORVU5Hr1G049220.22 , HORVU5Hr1G049220.20
Wheat TraesCS6A02G143100 , TraesCS7A02G470800 , TraesCS7D02G458200 , TraesCS6B02G171300 , TraesCS6B02G171300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
2 Sobic.006G264300 GA18008-PA, putative, expressed -
3 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
4 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
5 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
6 Sobic.002G296300 expressed protein -
7 Sobic.002G083266 - K00326: cytochrome-b5 reductase
8 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
9 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
10 Sobic.001G227500 expressed protein -
11 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
12 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
13 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
14 Sobic.001G026900 cytidine deaminase, putative, expressed -
15 Sobic.002G214900 polygalacturonase, putative, expressed -
16 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
17 Sobic.009G239500 CTP synthase, putative, expressed K01937: pyrG, CTP synthase
18 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
19 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
20 Sobic.007G045600 MSP domain containing protein, expressed -


Gene co-expression network
sample Sobic004G054300 Sobic004G054300 Sobic006G217700 Sobic006G217700 Sobic004G054300--Sobic006G217700 Sobic006G264300 Sobic006G264300 Sobic004G054300--Sobic006G264300 Sobic003G023500 Sobic003G023500 Sobic004G054300--Sobic003G023500 Sobic001G089500 Sobic001G089500 Sobic004G054300--Sobic001G089500 Sobic004G185900 Sobic004G185900 Sobic004G054300--Sobic004G185900 Sobic002G296300 Sobic002G296300 Sobic004G054300--Sobic002G296300 Sobic002G083266 Sobic002G083266 Sobic004G054300--Sobic002G083266 Sobic002G113800 Sobic002G113800 Sobic004G054300--Sobic002G113800 Sobic002G309400 Sobic002G309400 Sobic004G054300--Sobic002G309400 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic002G264400 Sobic002G264400 Sobic006G264300--Sobic002G264400 Sobic006G264300--Sobic002G083266 Sobic002G202300 Sobic002G202300 Sobic006G264300--Sobic002G202300 Sobic002G180600 Sobic002G180600 Sobic006G264300--Sobic002G180600 Sobic002G267500 Sobic002G267500 Sobic006G264300--Sobic002G267500 Sobic001G329100 Sobic001G329100 Sobic006G264300--Sobic001G329100 Sobic009G149400 Sobic009G149400 Sobic006G264300--Sobic009G149400 Sobic005G034400 Sobic005G034400 Sobic006G264300--Sobic005G034400 Sobic003G253000 Sobic003G253000 Sobic006G264300--Sobic003G253000 Sobic004G222600 Sobic004G222600 Sobic003G023500--Sobic004G222600 Sobic003G217100 Sobic003G217100 Sobic003G023500--Sobic003G217100 Sobic002G214900 Sobic002G214900 Sobic003G023500--Sobic002G214900 Sobic001G214200 Sobic001G214200 Sobic003G023500--Sobic001G214200 Sobic001G409900 Sobic001G409900 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic007G045600 Sobic007G045600 Sobic001G089500--Sobic007G045600 Sobic008G073300 Sobic008G073300 Sobic001G089500--Sobic008G073300 Sobic001G089500--Sobic002G202300 Sobic007G115100 Sobic007G115100 Sobic001G089500--Sobic007G115100 Sobic001G224400 Sobic001G224400 Sobic001G089500--Sobic001G224400 Sobic010G153100 Sobic010G153100 Sobic001G089500--Sobic010G153100 Sobic003G155400 Sobic003G155400 Sobic001G089500--Sobic003G155400 Sobic004G196300 Sobic004G196300 Sobic001G089500--Sobic004G196300 Sobic001G089500--Sobic002G296300 Sobic001G010400 Sobic001G010400 Sobic004G185900--Sobic001G010400 Sobic004G185900--Sobic007G148800 Sobic006G140000 Sobic006G140000 Sobic004G185900--Sobic006G140000 Sobic004G185900--Sobic004G054300 Sobic004G185900--Sobic010G016400 Sobic002G249000 Sobic002G249000 Sobic004G185900--Sobic002G249000 Sobic004G185900--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic004G185900--Sobic005G139400 Sobic010G176700 Sobic010G176700 Sobic004G185900--Sobic010G176700 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic003G220600 Sobic003G220600 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic007G142500 Sobic007G142500 Sobic002G113800--Sobic007G142500 Sobic002G113800--Sobic006G217700 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic006G150600 Sobic006G150600 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600
Octagon: transcription factors


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