Gene annotation
Transcriptome id Sobic.001G089500.1
Synonym Sb01g008070
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X145
Pfam PF00076
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G32450 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g53770.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016808 , Zm00025a033759 , Zm00025a043277 , Zm00025a043276
Brachypodium KQK13210
Barley HORVU5Hr1G095000.1 , HORVU5Hr1G095000.3 , HORVU5Hr1G095000.2 , HORVU5Hr1G095000.5 , HORVU5Hr1G095000.4 , HORVU5Hr1G095000.6
Wheat TraesCS5D02G397700 , TraesCS5D02G397700 , TraesCS5B02G392900 , TraesCS5A02G387800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G045600 MSP domain containing protein, expressed -
2 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
3 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
4 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
5 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
6 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
7 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
8 Sobic.004G196300 ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
9 Sobic.002G296300 expressed protein -
10 Sobic.002G214900 polygalacturonase, putative, expressed -
11 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
12 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
13 Sobic.001G331900 expressed protein -
14 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
15 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
16 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
17 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
18 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
19 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
20 Sobic.010G154700 - -


Gene co-expression network
sample Sobic001G089500 Sobic001G089500 Sobic007G045600 Sobic007G045600 Sobic001G089500--Sobic007G045600 Sobic008G073300 Sobic008G073300 Sobic001G089500--Sobic008G073300 Sobic002G202300 Sobic002G202300 Sobic001G089500--Sobic002G202300 Sobic007G115100 Sobic007G115100 Sobic001G089500--Sobic007G115100 Sobic001G224400 Sobic001G224400 Sobic001G089500--Sobic001G224400 Sobic010G153100 Sobic010G153100 Sobic001G089500--Sobic010G153100 Sobic003G155400 Sobic003G155400 Sobic001G089500--Sobic003G155400 Sobic004G196300 Sobic004G196300 Sobic001G089500--Sobic004G196300 Sobic002G296300 Sobic002G296300 Sobic001G089500--Sobic002G296300 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic008G073300--Sobic007G045600 Sobic002G371100 Sobic002G371100 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic001G025600 Sobic001G025600 Sobic008G073300--Sobic001G025600 Sobic008G073300--Sobic003G155400 Sobic008G073300--Sobic001G089500 Sobic003G253000 Sobic003G253000 Sobic002G202300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G202300--Sobic003G220600 Sobic006G141500 Sobic006G141500 Sobic002G202300--Sobic006G141500 Sobic006G264300 Sobic006G264300 Sobic002G202300--Sobic006G264300 Sobic002G046100 Sobic002G046100 Sobic002G202300--Sobic002G046100 Sobic003G115800 Sobic003G115800 Sobic002G202300--Sobic003G115800 Sobic010G204300 Sobic010G204300 Sobic002G202300--Sobic010G204300 Sobic006G062800 Sobic006G062800 Sobic002G202300--Sobic006G062800 Sobic006G182100 Sobic006G182100 Sobic002G202300--Sobic006G182100 Sobic001G418900 Sobic001G418900 Sobic007G115100--Sobic001G418900 Sobic004G269700 Sobic004G269700 Sobic007G115100--Sobic004G269700 Sobic007G115100--Sobic003G155400 Sobic001G505500 Sobic001G505500 Sobic007G115100--Sobic001G505500 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic010G023800 Sobic010G023800 Sobic007G115100--Sobic010G023800 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic010G153100--Sobic001G224400 Sobic010G153100--Sobic003G155400 Sobic001G445800 Sobic001G445800 Sobic010G153100--Sobic001G445800 Sobic010G153100--Sobic010G154700 Sobic010G153100--Sobic010G213400 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic010G153100--Sobic006G141500 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic007G051000 Sobic007G051000 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic004G196300--Sobic010G018400 Sobic003G249800 Sobic003G249800 Sobic004G196300--Sobic003G249800 Sobic001G309500 Sobic001G309500 Sobic004G196300--Sobic001G309500 Sobic001G034700 Sobic001G034700 Sobic004G196300--Sobic001G034700 Sobic004G196300--Sobic003G155400 Sobic002G078400 Sobic002G078400 Sobic004G196300--Sobic002G078400 Sobic004G196300--Sobic006G182100 Sobic004G196300--Sobic004G066800 Sobic004G196300--Sobic010G153100 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic002G296300--Sobic003G220600 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500
Octagon: transcription factors


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