Gene annotation
Transcriptome id Sobic.008G073300.1
Synonym Sb08g006500
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt C5YTM2
Pfam PF01217
Panther DB PTHR11753 PTHR11753:SF17
NCBI CDD KOG0935; Clathrin adaptor complex, small subunit
KEGG Orthology K11827; AP-2 complex subunit sigma-1
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT1G47830 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os12g10560.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025638 , Zm00025a015585
Brachypodium KQJ91878 , KQJ88773
Barley HORVU5Hr1G033310.4 , HORVU5Hr1G033310.1 , HORVU5Hr1G033310.3 , HORVU5Hr1G033310.2
Wheat TraesCS5A02G112300 , TraesCS5D02G119700 , TraesCS5A02G112300 , TraesCS5B02G113000 , TraesCS5B02G113000 , TraesCS5B02G113000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
4 Sobic.010G114700 heat shock factor-binding protein 1, putative, expressed -
5 Sobic.010G154700 - -
6 Sobic.003G386100 selenoprotein precursor, putative, expressed -
7 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
8 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
9 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
10 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
11 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
12 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
13 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
14 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
15 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
16 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
17 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
18 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
19 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
20 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b


Gene co-expression network
sample Sobic008G073300 Sobic008G073300 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic007G045600 Sobic007G045600 Sobic008G073300--Sobic007G045600 Sobic002G371100 Sobic002G371100 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic001G025600 Sobic001G025600 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic002G371100--Sobic008G073300 Sobic002G371100--Sobic001G025600 Sobic002G255100 Sobic002G255100 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic010G114700--Sobic008G073300 Sobic010G114700--Sobic004G066800 Sobic010G114700--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic010G114700--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic010G114700--Sobic001G096100 Sobic006G203900 Sobic006G203900 Sobic010G114700--Sobic006G203900 Sobic010G114700--Sobic003G129800 Sobic005G027300 Sobic005G027300 Sobic010G114700--Sobic005G027300 Sobic010G013900 Sobic010G013900 Sobic010G114700--Sobic010G013900 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic001G132100 Sobic001G132100 Sobic010G154700--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic009G119900 Sobic009G119900 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic003G386100--Sobic004G066800 Sobic009G198500 Sobic009G198500 Sobic003G386100--Sobic009G198500 Sobic003G386100--Sobic003G124800 Sobic003G386100--Sobic001G025600 Sobic003G386100--Sobic006G232200 Sobic003G386100--Sobic008G073300 Sobic002G078400 Sobic002G078400 Sobic003G386100--Sobic002G078400 Sobic003G386100--Sobic007G045600 Sobic004G300900 Sobic004G300900 Sobic003G386100--Sobic004G300900 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G481700 Sobic001G481700 Sobic001G025600--Sobic001G481700 Sobic001G025600--Sobic003G129800 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic001G089500--Sobic007G045600 Sobic001G089500--Sobic008G073300 Sobic002G202300 Sobic002G202300 Sobic001G089500--Sobic002G202300 Sobic007G115100 Sobic007G115100 Sobic001G089500--Sobic007G115100 Sobic001G224400 Sobic001G224400 Sobic001G089500--Sobic001G224400 Sobic010G153100 Sobic010G153100 Sobic001G089500--Sobic010G153100 Sobic001G089500--Sobic003G155400 Sobic004G196300 Sobic004G196300 Sobic001G089500--Sobic004G196300 Sobic002G296300 Sobic002G296300 Sobic001G089500--Sobic002G296300
Octagon: transcription factors


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