Gene annotation
Transcriptome id Sobic.002G371100.1
Synonym Sb02g038990
Functional annotation 40S ribosomal protein S3-1, putative, expressed
UniProt C5XDY8
Pfam PF00189 PF07650
Panther DB PTHR11760:SF22 PTHR11760
NCBI CDD KOG3181; 40S ribosomal protein S3
KEGG Orthology K02985; RP-S3e, small subunit ribosomal protein S3e
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G35530 : Ribosomal protein S3 family protein
RAP-DB (Rice) LOC_Os07g41750.1 : 40S ribosomal protein S3-1, putative, expressed
MaizeGDB (Corn) Zm00025a048725
Brachypodium KQK15295 , PNT74776
Barley HORVU2Hr1G031940.1 , HORVU2Hr1G031940.2 , HORVU2Hr1G031940.9 , HORVU2Hr1G031940.8 , HORVU2Hr1G031940.3 , HORVU2Hr1G031940.5 , HORVU2Hr1G031940.4 , HORVU2Hr1G031940.7 , HORVU2Hr1G031940.6 , HORVU2Hr1G031940.10 , HORVU2Hr1G031940.12
Wheat TraesCS2A02G172000 , TraesCS2D02G179300 , TraesCS2B02G198400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G371100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
2 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
3 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
4 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
5 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
6 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
7 Sobic.003G308000 expressed protein K15902: PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
8 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
9 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
10 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
11 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
12 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
14 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
15 Sobic.001G172000 expressed protein -
16 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
18 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
20 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic002G371100 Sobic002G371100 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G255100 Sobic002G255100 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic007G045600 Sobic007G045600 Sobic008G073300--Sobic007G045600 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G481700 Sobic001G481700 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800 Sobic002G049300--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic004G103700--Sobic001G025600 Sobic004G103700--Sobic001G172000 Sobic006G010600 Sobic006G010600 Sobic004G103700--Sobic006G010600 Sobic002G135200 Sobic002G135200 Sobic004G103700--Sobic002G135200 Sobic004G103700--Sobic001G018800 Sobic004G103700--Sobic003G129800 Sobic007G134000 Sobic007G134000 Sobic004G103700--Sobic007G134000 Sobic002G222900 Sobic002G222900 Sobic004G103700--Sobic002G222900 Sobic010G150575 Sobic010G150575 Sobic004G103700--Sobic010G150575 Sobic003G308000--Sobic002G371100 Sobic009G212300 Sobic009G212300 Sobic003G308000--Sobic009G212300 Sobic003G308000--Sobic002G255100 Sobic009G234400 Sobic009G234400 Sobic003G308000--Sobic009G234400 Sobic010G100000 Sobic010G100000 Sobic003G308000--Sobic010G100000 Sobic001G096100 Sobic001G096100 Sobic003G308000--Sobic001G096100 Sobic006G017100 Sobic006G017100 Sobic003G308000--Sobic006G017100 Sobic005G091700 Sobic005G091700 Sobic003G308000--Sobic005G091700 Sobic003G308000--Sobic001G481700 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic003G387900 Sobic003G387900 Sobic009G227400--Sobic003G387900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.