Gene annotation
Transcriptome id Sobic.001G117400.2
Synonym Sb01g010360
Functional annotation DNA-directed RNA polymerase I subunit RPA12, putative, expressed
UniProt C5WN30
Pfam PF01096
Panther DB PTHR11239 PTHR11239:SF14
NCBI CDD KOG2907; RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
KEGG Orthology K03000; RPA12, DNA-directed RNA polymerase I subunit RPA12
Gene Ontology GO:0008270; zinc ion binding GO:0006351transcription, DNA-templated GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G25940 : TFIIB zinc-binding protein
RAP-DB (Rice) LOC_Os03g50380.1 : DNA-directed RNA polymerase I subunit RPA12, putative, expressed
MaizeGDB (Corn) Zm00025a007836
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
3 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
4 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
5 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
6 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
7 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
8 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
9 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
10 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
12 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
14 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
15 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
16 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
17 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
18 Sobic.001G331900 expressed protein -
19 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
20 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20


Gene co-expression network
sample Sobic001G117400 Sobic001G117400 Sobic003G160900 Sobic003G160900 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic002G371100 Sobic002G371100 Sobic001G117400--Sobic002G371100 Sobic005G191600 Sobic005G191600 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic004G002350 Sobic004G002350 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G404100 Sobic001G404100 Sobic001G117400--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic001G117400--Sobic001G481700 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic001G147100 Sobic001G147100 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic005G191600--Sobic001G117400 Sobic004G248900 Sobic004G248900 Sobic005G191600--Sobic004G248900 Sobic009G212300 Sobic009G212300 Sobic005G191600--Sobic009G212300 Sobic001G342200 Sobic001G342200 Sobic005G191600--Sobic001G342200 Sobic004G066800 Sobic004G066800 Sobic005G191600--Sobic004G066800 Sobic001G096100 Sobic001G096100 Sobic005G191600--Sobic001G096100 Sobic005G191600--Sobic002G255100 Sobic009G168000 Sobic009G168000 Sobic005G191600--Sobic009G168000 Sobic007G092100 Sobic007G092100 Sobic005G191600--Sobic007G092100 Sobic002G255100--Sobic009G227400 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic001G018800--Sobic010G023900 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200
Octagon: transcription factors


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