Gene annotation
Transcriptome id Sobic.005G191600.2,Sobic.005G191600.1
Synonym Sb05g024840
Functional annotation OsSigP7 - Putative Type I Signal Peptidase homologue
employs a putative Ser/Lys catalytic dyad, expressed
UniProt C5Y6I4 , Q8LJX5
Pfam PF00717
Panther DB PTHR12383 PTHR12383:SF23
NCBI CDD KOG0171; Mitochondrial inner membrane protease, subunit IMP1
KEGG Orthology K09647; mitochondrial inner membrane protease subunit 1
Gene Ontology GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G53530 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os11g40500.2 : OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a029332 , Zm00025a057280
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
2 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
3 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
4 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
5 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
6 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
8 Sobic.009G168000 selT-like protein precursor, putative, expressed -
9 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
10 Sobic.010G038700 expressed protein -
11 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
12 Sobic.009G001900 expressed protein -
13 Sobic.008G132800 expressed protein -
14 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
15 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
16 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
17 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
18 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
19 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
20 Sobic.009G045800 bifunctional protein folD, putative, expressed -


Gene co-expression network
sample Sobic005G191600 Sobic005G191600 Sobic001G117400 Sobic001G117400 Sobic005G191600--Sobic001G117400 Sobic004G248900 Sobic004G248900 Sobic005G191600--Sobic004G248900 Sobic009G212300 Sobic009G212300 Sobic005G191600--Sobic009G212300 Sobic001G342200 Sobic001G342200 Sobic005G191600--Sobic001G342200 Sobic004G066800 Sobic004G066800 Sobic005G191600--Sobic004G066800 Sobic001G096100 Sobic001G096100 Sobic005G191600--Sobic001G096100 Sobic002G255100 Sobic002G255100 Sobic005G191600--Sobic002G255100 Sobic009G168000 Sobic009G168000 Sobic005G191600--Sobic009G168000 Sobic007G092100 Sobic007G092100 Sobic005G191600--Sobic007G092100 Sobic003G160900 Sobic003G160900 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic002G371100 Sobic002G371100 Sobic001G117400--Sobic002G371100 Sobic001G117400--Sobic005G191600 Sobic001G117400--Sobic002G255100 Sobic004G002350 Sobic004G002350 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G404100 Sobic001G404100 Sobic001G117400--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic001G117400--Sobic001G481700 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic004G248900--Sobic001G404100 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic009G227400 Sobic009G227400 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G049300 Sobic002G049300 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800 Sobic002G078400 Sobic002G078400 Sobic009G168000--Sobic002G078400 Sobic007G091000 Sobic007G091000 Sobic009G168000--Sobic007G091000 Sobic010G065400 Sobic010G065400 Sobic009G168000--Sobic010G065400 Sobic006G109700 Sobic006G109700 Sobic009G168000--Sobic006G109700 Sobic008G127500 Sobic008G127500 Sobic009G168000--Sobic008G127500 Sobic003G305100 Sobic003G305100 Sobic009G168000--Sobic003G305100 Sobic009G168000--Sobic010G038700 Sobic001G502200 Sobic001G502200 Sobic009G168000--Sobic001G502200 Sobic003G277000 Sobic003G277000 Sobic009G168000--Sobic003G277000 Sobic007G092100--Sobic004G066800 Sobic007G092100--Sobic001G057300 Sobic001G505500 Sobic001G505500 Sobic007G092100--Sobic001G505500 Sobic001G035400 Sobic001G035400 Sobic007G092100--Sobic001G035400 Sobic007G092100--Sobic001G342200 Sobic007G092100--Sobic003G330500 Sobic007G092100--Sobic001G096100 Sobic007G092100--Sobic004G138800 Sobic007G092100--Sobic009G191200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.